Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120520X.Seq
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical pr...    36   0.026
Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p...    29   3.0  
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical
           protein F13A7.7 protein.
          Length = 358

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 356 MMQAEQLIFHLIYNNEEAVNVICDNLKYTAVSQAARNGYTQRLRNYKKHSRTTNPNTFCS 535
           M +  +L  H  Y+  + V +   NL Y+  + ++R      L ++   S T + NTF  
Sbjct: 222 MFEQAKLGRHKSYSGSQCVKLYIPNLSYSNSTSSSRASSVDSLASFNSQSSTDSQNTFRK 281

Query: 536 RVSRDEL 556
              RD+L
Sbjct: 282 NGGRDQL 288


>Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical
           protein C32H11.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 45  VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 155
           +GM P  + + + +FA+  S D    + SP  P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182


>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
            protein ZK328.7b protein.
          Length = 1098

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/92 (22%), Positives = 41/92 (44%)
 Frame = +2

Query: 227  FRRRRQSIQMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEE 406
            +RRR  S  + I +  +   E  +K  L+ S   ++E      ++Q  Q +  +  +N+E
Sbjct: 905  YRRREFSQAVDICKQALAYHETDLKANLLLSKI-FKEENKWTLVLQPCQTVIQVDPHNDE 963

Query: 407  AVNVICDNLKYTAVSQAARNGYTQRLRNYKKH 502
            A +++ D     + +  A   YT  L    +H
Sbjct: 964  ANSILADFYYIRSEAAHASTSYTTLLNTNPQH 995


>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical protein
            ZK328.7a protein.
          Length = 1332

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/92 (22%), Positives = 41/92 (44%)
 Frame = +2

Query: 227  FRRRRQSIQMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEE 406
            +RRR  S  + I +  +   E  +K  L+ S   ++E      ++Q  Q +  +  +N+E
Sbjct: 905  YRRREFSQAVDICKQALAYHETDLKANLLLSKI-FKEENKWTLVLQPCQTVIQVDPHNDE 963

Query: 407  AVNVICDNLKYTAVSQAARNGYTQRLRNYKKH 502
            A +++ D     + +  A   YT  L    +H
Sbjct: 964  ANSILADFYYIRSEAAHASTSYTTLLNTNPQH 995


>Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical
           protein T07G12.3 protein.
          Length = 638

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 368 EQLIFHLIYNNEEAVNV--ICDNLKYTAVSQAARNGYTQRLRNYKKHSRTT 514
           E+L+ H ++   + +NV  IC+  + + V+     GY + +R YK    TT
Sbjct: 525 EKLLNH-VHRKLKKLNVSEICETFRLSKVTSLIEYGYVRTMRTYKISVETT 574


>Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical
           protein F01D5.3 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 66  MRVNRCIFASIVSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRF 200
           M +   I    VS  AC    +PC  D Y D  D   +CN+ + K F
Sbjct: 1   MLLQSSILLLSVSLAACQISTAPCQDDPYTDCRDYAALCNNPMYKNF 47


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 187 SSNVLKCQKWFCP 225
           ++N+LK  KWFCP
Sbjct: 130 ATNILKLNKWFCP 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,012,977
Number of Sequences: 27780
Number of extensions: 260019
Number of successful extensions: 662
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)