Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120520X.Seq
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.4  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   8.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.4  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   8.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 419 ICDNLKYTAVSQAARN 466
           +CDN  YT++  A +N
Sbjct: 576 VCDNQTYTSLQMAMKN 591


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 312 IKIRLIPLSLFPTKCLAIVI*IDCRLRRKWAKPFLTF 202
           +K  ++  S+ P   L +   +DC  R+ W    L+F
Sbjct: 64  VKTNILIRSMGPVSELDMDYSMDCYFRQSWRDSRLSF 100


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 482 LRNYKKHSRTTNPNTFCSRVSRD 550
           LR Y+  +   N NTF + ++ D
Sbjct: 174 LRQYRLRAEDINMNTFIANIAVD 196


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 114 CITYKSPCSPDA 149
           C+  + PC+PDA
Sbjct: 49  CLLDQGPCTPDA 60


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 136 VRPTRIMTTDGLSATATSSNVLKCQKWFCPFS 231
           VRP  +         AT+  + K  ++F PFS
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSRFFFPFS 370


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 114 CITYKSPCSPDA 149
           C+  + PC+PDA
Sbjct: 49  CLLDQGPCTPDA 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,584
Number of Sequences: 438
Number of extensions: 3717
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)