Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120516.Seq
         (533 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   0.97 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   0.97 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   0.97 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   1.3  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   1.3  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    23   1.3  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    22   3.0  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    22   3.9  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   3.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   3.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   3.9  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   3.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   3.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   3.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   3.9  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    22   3.9  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    22   3.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   3.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   3.9  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   5.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   5.2  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     LVL  RQ+K
Sbjct: 253 HYNRYLTRRRRIEIAHTLVLSERQIK 278


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     LVL  RQ+K
Sbjct: 253 HYNRYLTRRRRIEIAHTLVLSERQIK 278


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     LVL  RQ+K
Sbjct: 253 HYNRYLTRRRRIEIAHTLVLSERQIK 278


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 406 AAGTKRKLDEYLDDSQSVVGQFN 474
           A G  R LDEYLD     + + N
Sbjct: 65  ADGNVRHLDEYLDVDAGTIAKLN 87


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           HTN  L R R I     L L  RQ+K
Sbjct: 243 HTNHYLTRRRRIEMAHALCLTERQIK 268


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           HTN  L R R I     L L  RQ+K
Sbjct: 25  HTNHYLTRRRRIEMAHALCLTERQIK 50


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 56  PTPSRASFDNGYSEFCDKQQPNDYL 130
           P P +   D    E CDK+ P  Y+
Sbjct: 102 PEPEKFDPDRFLPENCDKRHPYAYI 126


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 56  PTPSRASFDNGYSEFCDKQQPNDYLNYYNNP 148
           P P +   D    E C K+ P  YL +   P
Sbjct: 418 PDPEKFDPDRFLPENCQKRHPFAYLPFSAGP 448


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 240 HFNRYLTRRRRIEIAHALCLTERQIK 265


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 240 HFNRYLTRRRRIEIAHALCLTERQIK 265


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 262 HFNRYLTRRRRIEIAHALCLTERQIK 287


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 203 LKLLQSRCQILPCRL 159
           LKL+Q++ +I  CRL
Sbjct: 248 LKLMQNKLEITACRL 262


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 240 HFNRYLTRRRRIEIAHALCLTERQIK 265


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 196 HFNRYLTRRRRIEIAHALCLTERQIK 221


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 240 HFNRYLTRRRRIEIAHALCLTERQIK 265


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 28  HFNRYLTRRRRIEIAHALCLTERQIK 53


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 56  PTPSRASFDNGYSEFCDKQQPNDYLNYYNNP 148
           P P +   D    E C K+ P  YL +   P
Sbjct: 418 PDPEKFDPDRFLPENCQKRHPFAYLPFSAGP 448


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 264 HFNRYLTRRRRIEIAHALCLTERQIK 289


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 240 HFNRYLTRRRRIEIAHALCLTERQIK 265


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = -1

Query: 263 LSKIPLYRYHQLTN*RLPKSLKLLQSRCQILPCRLHPAWDCYNNSNSR 120
           L ++P++ Y      R+P         C   P R HP W+   N   R
Sbjct: 323 LGRVPIWPYTLYF--RMPHKCNGNAHNC---PSRSHPVWEIVMNELDR 365


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = -1

Query: 263 LSKIPLYRYHQLTN*RLPKSLKLLQSRCQILPCRLHPAWDCYNNSNSR 120
           L ++P++ Y      R+P         C   P R HP W+   N   R
Sbjct: 330 LGRVPIWPYTLYF--RMPHKCNGNAHNC---PSRSHPVWEIVMNELDR 372


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,679
Number of Sequences: 336
Number of extensions: 2406
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)