Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120516.Seq
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.3  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   3.1  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   3.1  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   4.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.1  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    26   4.1  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.1  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   7.1  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   9.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   9.4  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   9.4  

>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 68  RASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDND 244
           +A   N  +E    ++ ND  N  N PT +    VV ++E  +ASN +++  +     D
Sbjct: 24  QAKSKNSVAEDNVDRESNDGNNQVNEPTGNDNTQVVENTEDISASNVVSAEGAEASTGD 82


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 71  ASFDNGYSE-FCDKQQPNDYLN 133
           AS+D+   E +CDK  P DYLN
Sbjct: 348 ASYDSVDMETYCDKHTPPDYLN 369


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -1

Query: 158 HPAWD----CYNNSNSRWAVVYHKTLNSRCRTTLGTAS 57
           H  WD    C+  + +  +V Y KT N +   TLGT+S
Sbjct: 702 HLVWDDRVICFRVTMNENSVWYGKTCNPQLHITLGTSS 739


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -1

Query: 209 KSLKLLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLN 90
           K  ++  S   ++ C +  +WDC     + WA +    LN
Sbjct: 71  KDFRIRWSAIILIHCTISQSWDCLVEHGATWAKLLIALLN 110


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 8   QTTMTQINFNASYTSAPTPSRASF 79
           Q +  + +FNA+   APTPS A+F
Sbjct: 869 QPSYEEESFNATVIHAPTPSTATF 892


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 197 LLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLNSRCRTTLGTAS 57
           L Q++C++L        D Y  S S   V  HK +   C TT   AS
Sbjct: 61  LAQAQCKVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLAS 107


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 134 YYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDND 244
           YY+  TP+   TVVS + T+  S   AS +  + + D
Sbjct: 568 YYHVKTPEKGTTVVSRTVTSPKSGAYASPSKASYNQD 604


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 104 DKQQPNDYLNYYNNPTPDGADTVVSD 181
           D  QPN YL  Y NP     D  + D
Sbjct: 503 DLPQPNIYLTRYTNPPKSLLDNCILD 528


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 53  APTPSRASFDNGYSEFCDKQQPNDYLNYYNNP-TPDGADTVVSDSETAAASNFLASVNSL 229
           +P P  +S D+  S        N++L       T D  D+V+SDS T    +    VNSL
Sbjct: 290 SPPPGLSSMDSNGSSI-----ENNFLYTKRRANTSDSFDSVLSDSSTTPTISSSVQVNSL 344


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = -3

Query: 384 RLLKRFRIISRTGRLVLRNRQLKGFRIISRTNCFSEIXSGLEQNSIISLSSVNELTLAKK 205
           RLL  FR  + TG    R   +KG      T   +   S L    ++  S +  LT   K
Sbjct: 172 RLLPAFR--TPTGIPFARINLMKGVAYREVTENCAAAASSL----VLEFSMLTALTGNNK 225

Query: 204 FEAAAVSLSDTTVSAPSGVGLL 139
           F+A+A +   +     SG+GLL
Sbjct: 226 FKASAENAFFSVWKRRSGIGLL 247


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +2

Query: 35  NASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLA 214
           N    + PT +  +F+N  S   D +QP+   +  NN      +     S+ +++S  L+
Sbjct: 486 NQRCPATPTRNPFAFENTVSIHMDGRQPSPIKSRNNNQMSFAMEEEADVSQPSSSSFTLS 545

Query: 215 SVNSLT 232
             ++LT
Sbjct: 546 FPSALT 551


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 310 ESLELPVAENQSPSSAYNAESFEQSVGVNQPSAAGTKRKLDEYLDDSQS 456
           E  + P+ E++    +   ++  +S G+N  +   +KRK D  +DD Q+
Sbjct: 766 EQPKQPILEDRYFLESAVYDTSAESSGINVSNTRYSKRKSDFQVDDQQA 814


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,583
Number of Sequences: 5004
Number of extensions: 39351
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)