Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120516.Seq
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435... 29 1.8
03_02_0178 + 6195402-6199158,6199438-6200003 29 1.8
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 29 2.4
09_04_0170 + 15310240-15310397,15310523-15310605,15310689-153106... 29 3.1
12_01_0441 + 3484003-3484374,3485071-3485151,3485242-3485514,348... 28 4.1
11_01_0225 + 1761282-1762232,1762601-1762726,1762818-1763135 28 4.1
12_01_0989 + 10048036-10048125,10048232-10048816,10048930-100493... 28 5.4
07_03_1387 + 26202975-26203274,26203363-26203449,26203541-262036... 28 5.4
06_03_0588 + 22567820-22570802,22570917-22571269 28 5.4
07_03_0723 + 20954827-20954905,20954974-20956277 27 7.2
07_03_0118 - 13600948-13602174 27 9.5
>05_05_0080 -
22243175-22243226,22243342-22243389,22243485-22243540,
22243752-22243819,22244712-22244773,22245166-22245214,
22245818-22245899,22245987-22246064,22246441-22246499,
22246727-22246805,22246946-22247218
Length = 301
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 38 ASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLAS 217
A S+ P+ ++ G + QP+ YLN + P+G +V D A +A+
Sbjct: 175 AENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLATGGTIVAA 234
Query: 218 VNSLTD 235
++ L +
Sbjct: 235 IDLLVE 240
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Frame = +1
Query: 307 SESLELPVAENQSPSSAY--NAESFEQSVG-------VNQPSAAGTKRKLDEY 438
SESL+L PSS++ N+E F SV V+ PS + T++ LD Y
Sbjct: 799 SESLDLATCSQMLPSSSFRTNSEGFTGSVSLTNSQTFVHNPSCSLTQQSLDNY 851
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 29.1 bits (62), Expect = 2.4
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 41 SYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTV-VSDSETAAASNFLAS 217
S TS P+PS S DN E C+K + Y P P D V + S+ + +S
Sbjct: 412 SGTSLPSPSSTSMDNTTGE-CNK---DAYSEDEKKPHPRSVDCVGMGASDEPSHDTLSSS 467
Query: 218 VNSLTDDNDIMEFCSRPLXIS 280
V SL + ++P IS
Sbjct: 468 VTSLNKGLSNISIDNKPKSIS 488
>09_04_0170 +
15310240-15310397,15310523-15310605,15310689-15310697,
15310852-15310940,15311514-15311587,15311731-15311781,
15311887-15311963,15313865-15314463
Length = 379
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 8 QTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGA 163
+TT T +S S+P+P +A+ D+G S C P D Y+ DGA
Sbjct: 302 ETTTTSSTTTSS--SSPSPPQATKDDGASPQC--SFPEDIQTYFGCAAEDGA 349
>12_01_0441 +
3484003-3484374,3485071-3485151,3485242-3485514,
3485695-3485826,3485903-3486076,3486164-3486393,
3486562-3486679,3486717-3486743,3486948-3487079,
3487189-3487323,3487393-3487599,3487772-3487936
Length = 681
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 398 NHRQLELNGSWTNTWTIHKVWW 463
N R +NGSW W + K+ W
Sbjct: 361 NRRLAAVNGSWLGAWGLEKLLW 382
>11_01_0225 + 1761282-1762232,1762601-1762726,1762818-1763135
Length = 464
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 152 PDGADTV--VSDSETAAASNFLASVNSLTDDNDIMEFCSRPLXISEKQLVLLIIRNPLSC 325
PD AD + V D+ S F + TDDN ++++ S ++ LL I P+S
Sbjct: 205 PDLADAITDVLDNHPGPVSYFRVDSTTWTDDNQLVKWFETLSNKSVVEITLLNIGCPVST 264
Query: 326 LL 331
+L
Sbjct: 265 IL 266
>12_01_0989 +
10048036-10048125,10048232-10048816,10048930-10049331,
10049419-10049477,10049711-10049801,10050243-10050329,
10050723-10050791
Length = 460
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 325 PVAENQSPSSAYNAESFEQSVGVNQPSAAGTKRK 426
P A+N P+ A + + ++S VNQ SA KR+
Sbjct: 208 PCADNSVPADADDKQPLKESSIVNQGSAESVKRR 241
>07_03_1387 +
26202975-26203274,26203363-26203449,26203541-26203648,
26203708-26203980,26205242-26205355,26205900-26206268
Length = 416
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 331 AENQSPSSAYNAESFEQSVGVNQPSAAGTKRKLDEYLDDSQSV 459
A + PSS+ +A S+ S+ + P T DEYL D V
Sbjct: 71 AADARPSSSSDAVSYSSSISTDMPLYEPTGVSFDEYLLDRARV 113
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = -3
Query: 342 LVLRNRQLKGFRIISRTNCFSEIXSGLEQNSII-SLSSVNELTLAKKFEAAAVSLSDT-- 172
LVL N L G ++ NC S I L+ NS + S+ + ++L K+ + L D
Sbjct: 226 LVLMNNALSGQLPVALFNCSSLIDLDLKHNSFLGSIPPITAISLQMKY----LDLEDNHF 281
Query: 171 TVSAPSGVGLL 139
T + PS +G L
Sbjct: 282 TGTIPSSLGNL 292
>07_03_0723 + 20954827-20954905,20954974-20956277
Length = 460
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 410 LELNGSWTNTWTIHKVWWANLTRIN*SLNTR 502
+E+N S T W++H W + ++ S+N R
Sbjct: 272 VEINSSKTGLWSVHVNGWNGVVLVSLSVNRR 302
>07_03_0118 - 13600948-13602174
Length = 408
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 248 MEFCSRPLXISEKQLVLLIIRNPLSCL---LRRTNRPVLLIMRN 370
+EF R L +++ ++ L++ NP L L+R RP LI+R+
Sbjct: 138 IEFFRRELGLTDAEIRRLVLANPYRVLRYSLKRCIRPNYLILRD 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,033
Number of Sequences: 37544
Number of extensions: 260155
Number of successful extensions: 777
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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