Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120516.Seq
(533 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 31 0.45
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_30331| Best HMM Match : Amidase (HMM E-Value=0) 29 1.8
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37) 29 1.8
SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06) 28 4.2
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 5.5
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14) 27 7.3
SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0) 27 9.6
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 27 9.6
SB_25616| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_13476| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17) 27 9.6
>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 31.5 bits (68), Expect = 0.45
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 152 AWDCYNNSNSRWAVVYHKTLNSRCRTTLGTASE 54
AW YN + ++W VVY KT + R L E
Sbjct: 1207 AWKIYNETKNKWYVVYTKTAEQKERWRLAFTEE 1239
>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
Length = 1425
Score = 31.5 bits (68), Expect = 0.45
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -1
Query: 281 PRLXVVLSKIPLYRYHQLTN*RLPKSLKLLQSRCQILPCRLHPAWDCYNNSNSRWAVVYH 102
PR VV I L + L + +L+ RLH W C ++ S A++YH
Sbjct: 761 PRTQVVTKLIELADVLSDKHGNLVSFMAVLEGLALPQVTRLHHTWSCLHHQYSSSAIMYH 820
Query: 101 KTL 93
TL
Sbjct: 821 STL 823
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = -3
Query: 306 IISRTNCFSEIXSGLEQNSIISLSSVNELTLAKKFEAAAVSLSDTTVSAP 157
II E G+ N I S V EL KFE A SD+T +AP
Sbjct: 799 IIENIEFDKEKYYGIMDNDIKCKSDVGELKCPDKFENATKCSSDSTTTAP 848
>SB_30331| Best HMM Match : Amidase (HMM E-Value=0)
Length = 555
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 417 SSSCRWLVHTNRLLKRFRIISRTGRLVLRNRQLKGFRIISRTNC 286
S SCR + H++ L++R +IS V+ N + G ++ TNC
Sbjct: 153 SISCRGMPHSSGLVERKNVISEHDSEVVENLRQNGAIPMAVTNC 196
>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
Length = 1481
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 244 YNGILLKTTXNLGEAVSSAYYSESLELPVAENQSPSSAYNAESFEQ 381
Y + LK+ GE+ + + ++ E+P N SPSS A+S E+
Sbjct: 1284 YENVQLKSVLGEGESTDNVFRWKTSEVPTPNNTSPSSEV-AKSLEK 1328
>SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 80 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDI 247
DN ++ D ND +N N+ D D ++D N + N + DDND+
Sbjct: 52 DNDMNDDNDMNDDND-MNDDNDMNDDNDDNDMNDDNDMNDDNDMNDDNDMNDDNDM 106
>SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)
Length = 624
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 420 FSSSCRWLVHTNRLLKRFRIISRTG 346
F S RWL+ NRL + +++SR G
Sbjct: 190 FPESARWLIANNRLDEALQVLSRYG 214
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 80 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAAS 202
DNG C ++ D + + PTP G V SD AAS
Sbjct: 581 DNG----CTTEETMDTMGFIIPPTPTGGHNVTSDKPVMAAS 617
>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 27.9 bits (59), Expect = 5.5
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -3
Query: 345 RLVLRNRQLKGFRIISRTNCFSEIXSGLEQNSIISLSSVNELTLAKKFEAAAVSLSDTTV 166
RL R+R G ++ +R FS + + I + SSVNE+ A + + + +L DT V
Sbjct: 1032 RLTKRSRDCLGGKL-ARAQPFSGKTTARNRLLIRNYSSVNEIRAALRSQEVSGALIDTYV 1090
Query: 165 SA 160
+A
Sbjct: 1091 AA 1092
>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 80 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAAS 202
DNG C ++ D + + PTP G V SD AAS
Sbjct: 218 DNG----CTTEETMDTMGFIIPPTPTGGHNVTSDKPVMAAS 254
>SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14)
Length = 248
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 101 CDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVN 223
C+ + PND + P D D S + + AA NFL N
Sbjct: 149 CNVRSPNDQIRPIKIPDTDPQDLPPSTNFSMAAGNFLEVYN 189
>SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)
Length = 567
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -3
Query: 420 FSSSCRWLVHTNRLLKRFRIISRTGRLVLRNRQLKGFRIISRTNCFSEIXSGLEQNSIIS 241
F S + L NR ++ I S VL +R +KGFRI R N E + ++ +++S
Sbjct: 321 FYSEVKDLKVRNRHMQHMCIDSEKSEKVLLDRNIKGFRI--RQNITRESKNTCDRMTLMS 378
Query: 240 L 238
+
Sbjct: 379 I 379
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 62 PSRASFDNGYSEFCDKQQPNDYLNYYNNP 148
P+ + GYS Q P +Y YY NP
Sbjct: 1253 PTSIQYTGGYSYPSAPQLPQNYAQYYANP 1281
>SB_25616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -1
Query: 197 LLQSRCQILP-CRLHPAWDCYNNSNSRWAVVYHKTLNSRCRTTLGTASE 54
L ++ + P CR + C N W+V H R +TL ASE
Sbjct: 41 LFEASRHVFPSCRACCIYRCAANGKGLWSVRAHLRAEERTSSTLSIASE 89
>SB_13476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -1
Query: 197 LLQSRCQILP-CRLHPAWDCYNNSNSRWAVVYHKTLNSRCRTTLGTASE 54
L ++ + P CR + C N W+V H R +TL ASE
Sbjct: 41 LFEASRHVFPSCRACCIYRCAANGKGLWSVRAHLRAEERTSSTLSIASE 89
>SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)
Length = 683
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -2
Query: 457 HFVNRPSIRPASV*FQLPMVGSHQQTAQKIPHYKQNWAIGSPQQAAQGIPN 305
HF N PS+R ++ Q V + Q++ + K+ GS +AAQG+PN
Sbjct: 427 HFNNSPSLRSITLRGQTSAVHGQRSLDQEVFYQKK----GS-LRAAQGVPN 472
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,112,135
Number of Sequences: 59808
Number of extensions: 299774
Number of successful extensions: 784
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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