Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120516.Seq
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical pr...    31   0.39 
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   2.8  
AC024763-10|AAK93862.2|  598|Caenorhabditis elegans Hypothetical...    28   4.8  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U64598-13|AAL65779.1|  388|Caenorhabditis elegans Paf-acetylhydr...    27   6.4  
AF386745-1|AAL57290.1|  388|Caenorhabditis elegans PAF-2 protein.      27   6.4  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U50135-6|AAN63429.1|  925|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associa...    27   8.5  
AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap (death-as...    27   8.5  

>Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1053.2 protein.
          Length = 536

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +1

Query: 280 GEAVSSAYYSESLELPVAENQSPSSAYNAESFEQSV 387
           GEAV S+    SL LPV E+  PSS    +SF Q++
Sbjct: 92  GEAVKSSQLPSSLYLPVKESSKPSS-NPCDSFRQAI 126


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
           protein F46C3.3 protein.
          Length = 2557

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -3

Query: 402 WLVHTNRLLKRFRIISRTGRLVLRNRQLKGFRIISRTNCFSEIXSGLEQNSIISLSSVNE 223
           W    + ++KR  +    GR + RN++L  +     T       SG  Q +++    +NE
Sbjct: 699 WKARRDYIIKREEMFKAIGRTMKRNKRLDAYHQALGTE-----NSGQLQQTLVGYIDINE 753

Query: 222 LTLAKKFEAAAVSLSDTT 169
              AKKF     S SD T
Sbjct: 754 --DAKKFLERPTSDSDAT 769


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +2

Query: 125 YLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMEFCSRPLXISEKQLVLLI 304
           Y+ +Y N T  G  +   D+ T +A N   SV+ + +  D   +   P  + +     + 
Sbjct: 122 YVGFYANNTTPGFGS--GDTVTCSAGNVCTSVSGVYNGYDAAAYACMPQGLCDGIFPNID 179

Query: 305 IRNPLSC 325
             NP++C
Sbjct: 180 PNNPIAC 186


>AC024763-10|AAK93862.2|  598|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.1 protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +1

Query: 259 LKTTXNLGEAVSSAYYSESLELPVAENQSP-----SSAYNAESFEQSVGVNQPSAAGTKR 423
           +KTT  L       YYSE+L+  + +  +       S Y+  + +  +   +PSA GT R
Sbjct: 297 IKTTIRLHNDSPGFYYSEALQCFMDDPNNVLEHWLLSKYSNSTLQVGISAGEPSAIGTPR 356

Query: 424 KLDEYLDDSQS 456
            +   + D+++
Sbjct: 357 FVIAEITDAKA 367


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 467 WPTTLCESSKYSSSFRLVPAADGWFTPTDCSKD 369
           +P   C+  K++   +LVP   GW+    C +D
Sbjct: 314 YPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRD 346


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +2

Query: 125 YLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMEFCSRPLXISEKQLVLLI 304
           Y+ +Y N T  G  +   D+ T +  N   SV+ + +  D   +   P  + +     + 
Sbjct: 122 YVGFYANNTTPGFGS--GDTVTCSPGNVCTSVSGVYNGYDAAAYACMPQGLCDSIFPNID 179

Query: 305 IRNPLSC 325
             NP++C
Sbjct: 180 PNNPIAC 186


>U64598-13|AAL65779.1|  388|Caenorhabditis elegans
           Paf-acetylhydrolase protein 2,isoform a protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = -1

Query: 458 TLCESSKYSSSFRLVPAADGWFTPTDC-----SKDSAL*AELGDW 339
           T   SS Y++ F+     DGW  P D      +K   L   +GDW
Sbjct: 243 TSLASSAYTTDFQKAIVFDGWMYPLDSTQQEQAKQPTLFLNVGDW 287


>AF386745-1|AAL57290.1|  388|Caenorhabditis elegans PAF-2 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = -1

Query: 458 TLCESSKYSSSFRLVPAADGWFTPTDC-----SKDSAL*AELGDW 339
           T   SS Y++ F+     DGW  P D      +K   L   +GDW
Sbjct: 243 TSLASSAYTTDFQKAIVFDGWMYPLDSTQQEQAKQPTLFLNVGDW 287


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 268  TXNLGEAVSSAYYSESLELP--VAENQSPSSAYNAESFEQSVGVNQPSAAGTKRKLDEYL 441
            T +L      +Y+++ L  P  +A + S  + Y A+S    +GV   +    K  + E L
Sbjct: 1343 TSSLNGTEHKSYFNKELSSPEGIAVDWSSRNVYYADSMNDEIGVASLNGKFKKSLVTEGL 1402

Query: 442  DDSQSVV 462
             + +SVV
Sbjct: 1403 VNPRSVV 1409


>U50135-6|AAN63429.1|  925|Caenorhabditis elegans Hypothetical
           protein C52E12.1 protein.
          Length = 925

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 295 SAYYSESLELPVAENQSPSSAYNAESFEQSVGVNQPSAAGTKRKLDEY--LDDSQS 456
           SAY S   E P    Q+P     +  F +    N+P+A      +D +  L DS S
Sbjct: 416 SAYTSNQQEFPSLAPQAPPPNVRSSEFPRLNKANKPAAPAAPAVVDHFPSLGDSSS 471


>AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associated
            protein kinase protein.
          Length = 1425

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 463  PPHFVNRP-SIRPASV*F--QLPMVGSHQQTAQKIPHYKQNWAIGSPQQAAQG 314
            PPH + R  SI    +    Q+P V S  Q+  +       WAI  P+QA+ G
Sbjct: 1315 PPHAMGRDWSILAVKLQLTDQVPDVDSTGQSLSRTDQLLNEWAIHHPEQASVG 1367


>AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap
            (death-associated protein)kinase homolog protein 1
            protein.
          Length = 1425

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 463  PPHFVNRP-SIRPASV*F--QLPMVGSHQQTAQKIPHYKQNWAIGSPQQAAQG 314
            PPH + R  SI    +    Q+P V S  Q+  +       WAI  P+QA+ G
Sbjct: 1315 PPHAMGRDWSILAVKLQLTDQVPDVDSTGQSLSRTDQLLNEWAIHHPEQASVG 1367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,116,377
Number of Sequences: 27780
Number of extensions: 223703
Number of successful extensions: 748
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)