Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120516.Seq
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   0.85 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   3.4  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.5  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   4.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   7.9  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 13/66 (19%), Positives = 27/66 (40%)
 Frame = +2

Query: 2   NNQTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSD 181
           ++Q   +  N         +P+ AS ++  S         +Y   +N+P+P G+    S 
Sbjct: 14  HHQQLFSSANPGTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73

Query: 182 SETAAA 199
           S  + +
Sbjct: 74  SSASTS 79


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 312 FRIISRTNCFSEIXSGLEQNSIISLSSVNELT 217
           FRI     C  EI   L    +IS ++V+ELT
Sbjct: 464 FRINLGIECGYEIKKLLRYKLLISQNAVSELT 495


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 28  HYNRYLTRRRRIEIAHALCLTERQIK 53


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 28  HFNRYLTRRRRIEIAHALCLTERQIK 53


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 373 KIPHYKQNWAIG 338
           K P+Y  NW IG
Sbjct: 514 KAPNYSVNWTIG 525


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 HTNRLLKRFRIISRTGRLVLRNRQLK 316
           H NR L R R I     L L  RQ+K
Sbjct: 290 HYNRYLTRRRRIEIAHALCLTERQIK 315


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 387 NRLLKRFRIISRTGRLVLRNRQLKGFRIISRTNCF 283
           N+L++  + +      ++R+ Q  G  I+ +T CF
Sbjct: 195 NKLIEESKTVFILNNEIIRSIQGTGTIILKKTVCF 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,816
Number of Sequences: 438
Number of extensions: 2730
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)