Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120516.Seq
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    29   2.6  
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    28   3.4  
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont...    27   5.9  
At3g03970.3 68416.m00418 expressed protein                             27   5.9  
At3g03970.2 68416.m00417 expressed protein                             27   5.9  
At3g03970.1 68416.m00416 expressed protein                             27   5.9  
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res...    27   5.9  

>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 161 LHPAWDCYNNSNSRW 117
           L  AWDCY ++N RW
Sbjct: 423 LSTAWDCYMDANDRW 437


>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
           (Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
           to mitochondrial sorting protein 1 (MSP1) protein
           (TAT-binding homolog 4) (Swiss-Prot:P28737)
           [Saccharomyces cerevisiae]
          Length = 1265

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 307 SESLELPVAENQSPSSAYNAESFEQSVGVNQPSAAGTKR 423
           S + E+P+ ENQ P+S   +ES E  +G + P A   ++
Sbjct: 55  SSASEVPI-ENQGPASDPGSESGEPELGSSDPQAMDAEK 92


>At5g10660.1 68418.m01234 calmodulin-binding protein-related
           contains weak similarity to calmodulin-binding proteins
          Length = 407

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 247 NGILLKTTXNLGEAVS--SAYYSESLELPVAENQSPSSAYNAESFEQSVGVNQPSAAGTK 420
           N   + TT ++ EAV+   +   E  E  V E +  SSA   E+ E    V +    GTK
Sbjct: 298 NSETVATTTDMNEAVNVEESKEEEKEEAEVKEEEGESSAAKEETTETMAQVEELPEEGTK 357

Query: 421 RKL 429
            ++
Sbjct: 358 NEV 360


>At3g03970.3 68416.m00418 expressed protein
          Length = 554

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
 Frame = +2

Query: 32  FNASYTSAPTPSRASFDNGYS----EFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAA 199
           FN S  S    SR+S  N       + C K   + +         D    ++  SET+++
Sbjct: 410 FNESVCSRTNRSRSSRRNTKKRQSGDICSKHHRHGFAQDPFTELLDNRQQLLQYSETSSS 469

Query: 200 SNFLASVNSLTDDNDIMEFCSRPLXISEKQLVLLIIRNPLSCLLRRT 340
           S+   +  + T  N   + C +P    + +  L  +   L   L R+
Sbjct: 470 SSIYDTSGTTTPTNTTEDICEKPKTDLDSEAKLKTVETELDPRLGRS 516


>At3g03970.2 68416.m00417 expressed protein
          Length = 554

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
 Frame = +2

Query: 32  FNASYTSAPTPSRASFDNGYS----EFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAA 199
           FN S  S    SR+S  N       + C K   + +         D    ++  SET+++
Sbjct: 410 FNESVCSRTNRSRSSRRNTKKRQSGDICSKHHRHGFAQDPFTELLDNRQQLLQYSETSSS 469

Query: 200 SNFLASVNSLTDDNDIMEFCSRPLXISEKQLVLLIIRNPLSCLLRRT 340
           S+   +  + T  N   + C +P    + +  L  +   L   L R+
Sbjct: 470 SSIYDTSGTTTPTNTTEDICEKPKTDLDSEAKLKTVETELDPRLGRS 516


>At3g03970.1 68416.m00416 expressed protein
          Length = 554

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
 Frame = +2

Query: 32  FNASYTSAPTPSRASFDNGYS----EFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAA 199
           FN S  S    SR+S  N       + C K   + +         D    ++  SET+++
Sbjct: 410 FNESVCSRTNRSRSSRRNTKKRQSGDICSKHHRHGFAQDPFTELLDNRQQLLQYSETSSS 469

Query: 200 SNFLASVNSLTDDNDIMEFCSRPLXISEKQLVLLIIRNPLSCLLRRT 340
           S+   +  + T  N   + C +P    + +  L  +   L   L R+
Sbjct: 470 SSIYDTSGTTTPTNTTEDICEKPKTDLDSEAKLKTVETELDPRLGRS 516


>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
           responsive-to-antagonist 1, putative /
           copper-transporting ATPase, putative similar to ATP
           dependent copper transporter SP|Q9S7J8 [Arabidopsis
           thaliana]
          Length = 995

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 152 PDGADTVVSDSETAAASNFLASVNS 226
           PD A+ +++DSE  A +  L S+NS
Sbjct: 761 PDDAEELLADSEDMAQTGILVSINS 785


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,370,837
Number of Sequences: 28952
Number of extensions: 203549
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)