Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120515.Seq
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    34   0.023
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    29   0.88 
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   6.2  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +3

Query: 261 IIRPGTLAVRLTANIIAGHLLITLL-----RRTGTN-ISFYXXXXXXXXXXXXXXXESAV 422
           I R  +L +RL ANIIAGHL +++L        G N I+F                E  +
Sbjct: 175 IARGLSLGIRLGANIIAGHLTMSILGGLIFTFMGLNLITFIIGFLPITVLVAISLLEFGI 234

Query: 423 AIIQSYVITIL 455
           A IQ+YV  IL
Sbjct: 235 AFIQAYVFAIL 245


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 165 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHRNIIRPGTLAVRLTAN 302
           N K ++++   NS +N++   +I +N+ NH NII+P T    + +N
Sbjct: 468 NSKNRTNVTKPNSYKNSVL--SIGNNHSNHSNIIKPNTYKNTILSN 511


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 322 NKCPAIMLAVNRTAKVPGRIIFLWFQ 245
           N  PAI   + R   +P R + +WFQ
Sbjct: 190 NPPPAIREKIGRELNIPERSVTIWFQ 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,048
Number of Sequences: 5004
Number of extensions: 18676
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)