Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120513.Seq
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 131 9e-32
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 28 1.3
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 3.8
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 5.1
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 5.1
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 5.1
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.7
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 6.7
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 25 8.9
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 131 bits (316), Expect = 9e-32
Identities = 55/84 (65%), Positives = 74/84 (88%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
+KTGMV++ GEIT+++ +DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA
Sbjct: 47 SKTGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQ 106
Query: 436 GVHENRNDEEVGAGDQGLMFGYAT 507
G+H + EE+GAGDQG+MFGYAT
Sbjct: 107 GLHYEKALEELGAGDQGIMFGYAT 130
Score = 78.2 bits (184), Expect = 9e-16
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 131 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET K
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASK 48
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 483 GLDVRLCNSETEECMPLTVVLAHKLNPKIAELRRNG 590
G+ ET E +PLT++LAHKLN ++ RR+G
Sbjct: 123 GIMFGYATDETPEKLPLTILLAHKLNAAMSVARRDG 158
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -3
Query: 595 NSPFRLSSAIFGLSLCASTTVNGMHSSVSLL 503
N+PF +S +++G S +T ++G+H V +
Sbjct: 195 NAPFTISDSVYGASFYFATGLHGIHIIVGTI 225
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 35 WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAIL 205
W + K M S T S+D E S+F S+SV E CD+ SD L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = +1
Query: 346 IGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATVRQKNA 525
+GY + F V+ +D N + +N + D G++F Y+ +R +NA
Sbjct: 315 VGYRTNPLSFTCGCEGVIHYMDADFVNYRGEITTIKNAISIHEEDDGVLFKYSDLRDRNA 374
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 402 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 277
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 298 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 417
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 187 LVAHFVWMTLANRFRCEQKY*SIFHII 107
L+ HFVW + CE+K+ S H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 433 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 314
Q +V V + + CM+ +QSL + HN ++ F+ +L D
Sbjct: 61 QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 114 WKMDQYFCSHRNLLARVIQTKC 179
W + + F S+R L A I+T C
Sbjct: 27 WNISKTFLSYRTLTALAIETSC 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,603
Number of Sequences: 5004
Number of extensions: 62331
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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