Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120513.Seq
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 105 2e-23
01_02_0051 - 10655867-10657057 104 7e-23
01_03_0090 - 12347165-12348349 101 6e-22
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 31 0.56
12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339... 30 1.3
04_04_0543 - 26112461-26112667 28 5.2
12_02_0655 + 21588662-21589051 28 6.9
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 27 9.2
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94... 27 9.2
>05_01_0264 + 2030080-2031270
Length = 396
Score = 105 bits (253), Expect = 2e-23
Identities = 49/86 (56%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
TKT MV++ GEIT+KANVDY+K+VRET ++IG+ + G D C V++ ++QQSP+IA
Sbjct: 49 TKTNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQ 108
Query: 436 GVHEN--RNDEEVGAGDQGLMFGYAT 507
GVH + + EE+GAGDQG MFGYAT
Sbjct: 109 GVHGHFTKRPEEIGAGDQGHMFGYAT 134
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +2
Query: 131 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET K
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTK 50
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 510 ETEECMPLTVVLAHKLNPKIAELRRNG 590
ET E MPL+ VLA KL ++ E+R+NG
Sbjct: 136 ETPELMPLSHVLATKLGARLTEVRKNG 162
>01_02_0051 - 10655867-10657057
Length = 396
Score = 104 bits (249), Expect = 7e-23
Identities = 48/86 (55%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
TKT MV++ GEIT+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA
Sbjct: 49 TKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQ 108
Query: 436 GVHEN--RNDEEVGAGDQGLMFGYAT 507
GVH + + EE+GAGDQG MFGYAT
Sbjct: 109 GVHGHFTKRPEEIGAGDQGHMFGYAT 134
Score = 78.6 bits (185), Expect = 4e-15
Identities = 35/50 (70%), Positives = 41/50 (82%)
Frame = +2
Query: 113 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET K
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTK 50
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 510 ETEECMPLTVVLAHKLNPKIAELRRNG 590
ET E MPL+ VLA KL ++ E+R+NG
Sbjct: 136 ETPELMPLSHVLATKLGARLTEVRKNG 162
>01_03_0090 - 12347165-12348349
Length = 394
Score = 101 bits (241), Expect = 6e-22
Identities = 47/86 (54%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
TKT MV++ GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA
Sbjct: 48 TKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQ 107
Query: 436 GVHEN--RNDEEVGAGDQGLMFGYAT 507
GVH + + EE+GAGDQG MFGYAT
Sbjct: 108 GVHGHFTKRPEEIGAGDQGHMFGYAT 133
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = +2
Query: 131 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET K
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTK 49
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 510 ETEECMPLTVVLAHKLNPKIAELRRNG 590
ET E MPL+ VLA KL ++ E+R+NG
Sbjct: 135 ETPELMPLSHVLATKLGARLTEVRKNG 161
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -3
Query: 547 ASTTVNGMHSSVSLLHNRTSSPGLLPQLPRHFCSHAPQ 434
+S+ +NG S+L +SS G L QLPR+F S P+
Sbjct: 1675 SSSELNGQPLDDSILDIESSSFGFLSQLPRNFFSDLPE 1712
>12_02_0952 -
24731799-24731901,24732169-24732231,24732941-24733980,
24734094-24734339
Length = 483
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 523 HSSVSLLHNRTSSPGLLPQLPRHFCSHAPQQQCLVI 416
H++ LLH R LLP++ RHF H QQQ +++
Sbjct: 92 HAAAPLLHRRI----LLPEVDRHFKPHRCQQQRVMV 123
>04_04_0543 - 26112461-26112667
Length = 68
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 623 CVLNLVLPTKFSISPELCNFRIEFVCKHYSQRHAF 519
C+ N +LP + PE C+ + Y RH+F
Sbjct: 22 CLQNAMLPAGLAAGPEKCDCTCLCMMTEYQDRHSF 56
>12_02_0655 + 21588662-21589051
Length = 129
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +1
Query: 79 WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRASESGSGRK 237
WI QR ++ G W RGS V P +RR SRR SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 116 EDGSVFLFTSESVGEGHPDKM---CDQISDAIL 205
+DGS +LFTS+ E HP M D+ S+ IL
Sbjct: 765 QDGSEWLFTSKRTDESHPFTMHVNFDKFSEDIL 797
>03_01_0121 +
940338-940637,941023-941324,941417-941969,943889-944848
Length = 704
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 474 RRPGLDVRLCNSETEECMPLTVVLAHKL 557
R G+DVRLC E C L H++
Sbjct: 164 RSAGIDVRLCVDEEASCRKLNEAYIHRM 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,681,336
Number of Sequences: 37544
Number of extensions: 418934
Number of successful extensions: 1201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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