Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120513.Seq
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   3.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   3.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.8  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.8  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 536 CSACTQTQSENCRAQAKW 589
           C  CT+ Q +N    A+W
Sbjct: 75  CKKCTEIQKQNLDKLAEW 92


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 131 ILIHLPYHNCVRWFSRIHSFLKSPAF 54
           I+ HL  H  V W+S+  +F   P +
Sbjct: 173 IVFHLETHPNVTWYSQCVTFNAFPTY 198


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = -3

Query: 607 SCPQNSPFRLSSAIFGLSLCASTTVNGMHSSVSLLHNR----TSSPGLLPQL 464
           S P      L S  +G+S+C  T  + +      LH+R    T  PG++  L
Sbjct: 265 SLPPTEKTPLISLYYGVSICLVTFASALAVVTLNLHHRGVRGTRVPGIVRSL 316


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 536 CSACTQTQSENCRAQAKW 589
           C  CT+ Q +N    A+W
Sbjct: 75  CKKCTEIQKQNLDKLAEW 92


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 308 TLALDVISPHKSTIPVLVWFH--MQLLR 231
           TL ++  +P   T+P+  W H  + LLR
Sbjct: 524 TLEVEEWNPLTDTVPIHTWIHPWLPLLR 551


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 497 PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLH 387
           PN++P S    +++      P  M  D W+S  + LH
Sbjct: 57  PNVRPISSHQIANNVTMQLLPKLMEFDDWTSV-MELH 92


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 121 WISIFVHIGICWRGSSRQNVRPNKRR 198
           W+ + V +GI  +G +   VR N  R
Sbjct: 4   WLLLVVCLGIACQGITSVTVRENSPR 29


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 378 IKAFGRIIITNMFDRFAHNFLIIH 307
           +K   RI +   +D F H   ++H
Sbjct: 510 VKGMVRIFLGPKYDEFGHEVDLVH 533


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 378 IKAFGRIIITNMFDRFAHNFLIIH 307
           +K   RI +   +D F H   ++H
Sbjct: 510 VKGMVRIFLGPKYDEFGHEVDLVH 533


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 378 IKAFGRIIITNMFDRFAHNFLIIH 307
           +K   RI +   +D F H   ++H
Sbjct: 136 VKGMVRIFLGPKYDEFGHEVDLVH 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,189
Number of Sequences: 438
Number of extensions: 4058
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)