Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120513.Seq
(624 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati... 103 1e-22
At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2... 99 1e-21
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1... 99 1e-21
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1... 99 1e-21
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati... 98 4e-21
>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
similar to S-adenosylmethionine synthetase 2 (Methionine
adenosyltransferase 2, AdoMet synthetase 2)
[Catharanthus roseus] SWISS-PROT:Q96552
Length = 393
Score = 103 bits (247), Expect = 1e-22
Identities = 48/86 (55%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
TKT MV++ GEIT+KANVDY+++VR+T + IG+ + G D C V++ ++QQSP+IA
Sbjct: 46 TKTNMVMVFGEITTKANVDYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQ 105
Query: 436 GVHEN--RNDEEVGAGDQGLMFGYAT 507
GVH + + EEVGAGDQG MFGYAT
Sbjct: 106 GVHGHLTKKPEEVGAGDQGHMFGYAT 131
Score = 81.4 bits (192), Expect = 4e-16
Identities = 42/70 (60%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Frame = +2
Query: 131 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACE--TKLKPVWCF--CVAKSHP 298
FLFTSESV EGHPDK+CDQISDAILDA L QDP++KVACE TK V F K++
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANV 63
Query: 299 KLTWIIKKLC 328
I++K C
Sbjct: 64 DYEQIVRKTC 73
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +3
Query: 510 ETEECMPLTVVLAHKLNPKIAELRRNG 590
ET E MPLT VLA KL K+ E+R+NG
Sbjct: 133 ETPELMPLTHVLATKLGAKLTEVRKNG 159
>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
identical to S-adenosylmethionine synthetase 2
(Methionine adenosyltransferase 2, AdoMet synthetase 2)
[Arabidopsis thaliana] SWISS-PROT:P17562
Length = 393
Score = 99 bits (238), Expect = 1e-21
Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
TKT MV++ GEIT+KA +DY+K+VR+T + IG+ G D C V++ ++QQSP+IA
Sbjct: 46 TKTNMVMVFGEITTKATIDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQ 105
Query: 436 GVHEN--RNDEEVGAGDQGLMFGYAT 507
GVH + + E++GAGDQG MFGYAT
Sbjct: 106 GVHGHFTKRPEDIGAGDQGHMFGYAT 131
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +2
Query: 131 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET K
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTK 47
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +3
Query: 510 ETEECMPLTVVLAHKLNPKIAELRRNG 590
ET E MPL+ VLA K+ ++ E+R+NG
Sbjct: 133 ETPELMPLSHVLATKIGARLTEVRKNG 159
>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
identical to S-adenosylmethionine synthetase 1
(Methionine adenosyltransferase 1, AdoMet synthetase 1)
[Arabidopsis thaliana] SWISS-PROT:P23686
Length = 393
Score = 99 bits (238), Expect = 1e-21
Identities = 47/86 (54%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
TKT MV++ GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA
Sbjct: 46 TKTNMVMVFGEITTKATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQ 105
Query: 436 GVHEN--RNDEEVGAGDQGLMFGYAT 507
GVH + + EE+GAGDQG MFGYAT
Sbjct: 106 GVHGHFTKCPEEIGAGDQGHMFGYAT 131
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +2
Query: 131 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET K
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTK 47
Score = 33.9 bits (74), Expect = 0.088
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 510 ETEECMPLTVVLAHKLNPKIAELRRNG 590
ET E MPL+ VLA KL ++ E+R+NG
Sbjct: 133 ETPELMPLSHVLATKLGARLTEVRKNG 159
>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
identical to S-adenosylmethionine synthetase 1
(Methionine adenosyltransferase 1, AdoMet synthetase 1)
[Arabidopsis thaliana] SWISS-PROT:P23686
Length = 393
Score = 99 bits (238), Expect = 1e-21
Identities = 47/86 (54%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
TKT MV++ GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA
Sbjct: 46 TKTNMVMVFGEITTKATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQ 105
Query: 436 GVHEN--RNDEEVGAGDQGLMFGYAT 507
GVH + + EE+GAGDQG MFGYAT
Sbjct: 106 GVHGHFTKCPEEIGAGDQGHMFGYAT 131
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +2
Query: 131 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET K
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTK 47
Score = 33.9 bits (74), Expect = 0.088
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 510 ETEECMPLTVVLAHKLNPKIAELRRNG 590
ET E MPL+ VLA KL ++ E+R+NG
Sbjct: 133 ETPELMPLSHVLATKLGARLTEVRKNG 159
>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
similar to S-adenosylmethionine synthetase 3 (Methionine
adenosyltransferase 3, AdoMet synthetase 3)
[Lycopersicon esculentum] SWISS-PROT:P43282
Length = 390
Score = 98.3 bits (234), Expect = 4e-21
Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAA 435
TKT MV++ GEIT+ A VDY+K+VR T + IG+ + G D C+V++ ++QQSP+IA
Sbjct: 46 TKTNMVMVFGEITTAAKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQ 105
Query: 436 GVHEN--RNDEEVGAGDQGLMFGYAT 507
GVH + + E++GAGDQG MFGYAT
Sbjct: 106 GVHGHLTKKPEDIGAGDQGHMFGYAT 131
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +2
Query: 131 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETKLK 262
FLFTSESV EGHPDK+CDQISDAILDA L QDP++KVACET K
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTK 47
Score = 34.3 bits (75), Expect = 0.067
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 510 ETEECMPLTVVLAHKLNPKIAELRRN 587
ET E MPLT VLA KL K+ E+R+N
Sbjct: 133 ETPELMPLTHVLATKLGAKLTEVRKN 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,178,346
Number of Sequences: 28952
Number of extensions: 341984
Number of successful extensions: 1001
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -