Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120511.Seq
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54H58 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_A3GHF8 Cluster: Predicted protein; n=1; Pichia stipitis...    33   6.8  

>UniRef50_Q54H58 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 223

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -3

Query: 553 IEMTDINAKLSSSVFILVLKYLYELNNNHLTHDLAYLYKPV*RKLSKLNQTVRIRLSQFY 374
           IEM  IN   +   F++   + Y  NNN+  +++  L   +  K  K+NQ+    +  FY
Sbjct: 24  IEMIKINNNSTQIFFLINFNHTYNSNNNNNYNNILKLMVSISNKYCKINQSSDYEIKCFY 83

Query: 373 YL 368
            L
Sbjct: 84  NL 85


>UniRef50_A3GHF8 Cluster: Predicted protein; n=1; Pichia
           stipitis|Rep: Predicted protein - Pichia stipitis
           (Yeast)
          Length = 302

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = -3

Query: 577 YQNTVSEVIEMTDINAKLSSSVFILVLK--YLYELNNNHLTHDLAYLYKPV*RKLSKLNQ 404
           Y+   S V + +D   K+ SS F +  +  YLY  NN+++ ++L +   PV   L  LN+
Sbjct: 120 YKTRYSVVDDSSD--KKIHSSTFFIDCEKSYLYNTNNDYIPYNLRFWVSPV---LVNLNR 174

Query: 403 TVRIRLSQF 377
            +R  L+++
Sbjct: 175 MIRFSLNKY 183


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,115,081
Number of Sequences: 1657284
Number of extensions: 9195160
Number of successful extensions: 16444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16440
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)