Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120511.Seq
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    26   0.34 
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   4.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   7.4  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 286 IVLHLSQLFHTYQFRSIIQNHFVNVSRSIK 197
           IV+     F T +F SII+N FV ++R I+
Sbjct: 168 IVVKSGVAFQTIEFVSIIRNRFVILNRYIE 197


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 403 TVRIRLSQFYYLYL*SFGNSSLIRP*TFAILV*TFQQAVIVLHLSQLFHTYQFR 242
           T  I ++QFYY Y   F + +L     +  L   F Q + +L L+ L    Q +
Sbjct: 243 TFSICITQFYYCYDSGFNSDNLTD--VYFTLQWAFLQILEILALAYLCDKVQLK 294


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 122 VQSLGSRERQMRQYDAMRRDTEPFIFY 202
           V S+G+++    ++  +RRDT P  +Y
Sbjct: 201 VYSIGAKKSPPEKHLRLRRDTAPPQWY 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,005
Number of Sequences: 336
Number of extensions: 2643
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)