Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120511.Seq
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    26   4.6  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   6.0  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   8.0  

>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 514 VFILVLKYLYELNNNHLTHDL 452
           VF+LVL YL+ +    L HDL
Sbjct: 33  VFLLVLSYLFSIEAETLMHDL 53


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 466 DDYYLVHINILIPR*KHYCLISRLY 540
           DD Y ++I I+    KH CLI++++
Sbjct: 502 DDNYFINIFIIFLIIKHMCLITKMF 526


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 387 LVNSIIYTYKASVTRH**DHKRLQFWFERF 298
           L +SI+Y     V  H    K+L FW  RF
Sbjct: 150 LFDSIVYVVGEIVVTHNKKEKKLSFWRSRF 179


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
            Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
 Frame = -3

Query: 586  LVVYQNTVSEVIEMTDINAKLSSSVFILVLKYLYELNNNHLTHDLAYLYKPV*RKLSKL- 410
            ++  + T  +V E++D ++KLS S ++    ++Y    +++T++    Y+P    L++  
Sbjct: 808  VIALEATNYDVNEVSDSDSKLSCSKYMCSFTFIYSDFTSNITNN----YRPRIYYLAQFS 863

Query: 409  ---NQTV-RIRLSQFYYLY 365
               NQ++   RL  F+ +Y
Sbjct: 864  VCENQSIMTFRLQPFHVIY 882


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,033
Number of Sequences: 5004
Number of extensions: 43789
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)