Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120511.Seq
         (705 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058707-1|AAL13936.1|  703|Drosophila melanogaster LD43147p pro...    30   2.7  
AF179590-1|AAD53181.1|  735|Drosophila melanogaster ubiquitin-sp...    30   2.7  
AE014296-3035|AAF49249.1|  735|Drosophila melanogaster CG4166-PA...    30   2.7  

>AY058707-1|AAL13936.1|  703|Drosophila melanogaster LD43147p
           protein.
          Length = 703

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 106 YKRLMCTISRFT*ETNASIRCYATRHRAVYILWTEIRSQSGFE 234
           +K L+C +SR   E  +  R   + HR ++++W   +  +G+E
Sbjct: 406 HKCLVCEVSRLFQEFYSGSRSPLSLHRLLHLIWNHAKHLAGYE 448


>AF179590-1|AAD53181.1|  735|Drosophila melanogaster
           ubiquitin-specific protease nonstopprotein.
          Length = 735

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 106 YKRLMCTISRFT*ETNASIRCYATRHRAVYILWTEIRSQSGFE 234
           +K L+C +SR   E  +  R   + HR ++++W   +  +G+E
Sbjct: 438 HKCLVCEVSRLFQEFYSGSRSPLSLHRLLHLIWNHAKHLAGYE 480


>AE014296-3035|AAF49249.1|  735|Drosophila melanogaster CG4166-PA
           protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 106 YKRLMCTISRFT*ETNASIRCYATRHRAVYILWTEIRSQSGFE 234
           +K L+C +SR   E  +  R   + HR ++++W   +  +G+E
Sbjct: 438 HKCLVCEVSRLFQEFYSGSRSPLSLHRLLHLIWNHAKHLAGYE 480


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,065,702
Number of Sequences: 53049
Number of extensions: 406863
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)