Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120509.Seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    27   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.4  
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces...    25   7.8  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 484 SKSCLSLHVQGIGRKIKQPLAFYFIRGTVSSEKLAVLIKDIIKEITNSGFQVLSTICDQA 663
           S    S+ ++ +  ++   + FYF  G +  +K     KD   E+  SGF  LST+   +
Sbjct: 18  SGELFSVKLRALRERMADSVDFYFPTGPIELDKA----KD---ELNGSGFDALSTVFSSS 70

Query: 664 P 666
           P
Sbjct: 71  P 71


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 106  FLKEIVTSALINQKRKSQGKRWTIKNKISAL 198
            FLK I TS    QKR  Q  +W    +++AL
Sbjct: 1842 FLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL 1872


>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 114

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 261 IKTLQKLMKKIPVEPGLNTAVLDHLKKLAPIKKI 362
           + T  + +KK+  +   NT VL+ L+K+AP   I
Sbjct: 15  LSTYVESLKKLETQLQENTTVLNELEKVAPDSNI 48


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 113 FRNSDDKLSISFALFFNDANVHFVFLNSLK 24
           FR ++ KLS+S  L F D  +   +LN  K
Sbjct: 283 FRGTELKLSVSMNLAFRDILLSSAYLNKTK 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,333
Number of Sequences: 5004
Number of extensions: 52254
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)