Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120509.Seq
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053           28   6.2  
04_04_1554 + 34372480-34372587,34372692-34372871,34372985-343730...    28   6.2  
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931...    28   8.1  

>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
          Length = 1613

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +3

Query: 189 ISISHLQAFTKSLPISAISRTIPSIKTLQKLMKKIPVEPGLNTAVLDHLKKLAPIK 356
           +S+SH+++FT S  +  +    P ++ L+ L   +     LN + L+++ K   +K
Sbjct: 573 VSVSHVRSFTMSASVEEVPMFFPQMRLLRVL--DLQGSSCLNNSTLNYICKFYQLK 626


>04_04_1554 +
           34372480-34372587,34372692-34372871,34372985-34373032,
           34374061-34374117,34374206-34374307,34374434-34374499,
           34374973-34375074,34375116-34375205
          Length = 250

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 294 PVEPGLNTAVLDHLKKLAPIKKIRAKLCSLVFDEIALKERLTYS 425
           P  PG  T     +K+L   +K+  +L  +VF+EI  +E  T++
Sbjct: 91  PANPGKLTTRQIVVKRLGGCRKVTCQLLGVVFEEITPQELQTHA 134


>12_02_0718 +
           22491241-22491897,22491989-22492126,22493017-22493142,
           22493389-22493493,22493650-22494046,22494144-22494273,
           22494358-22494652,22494736-22495005
          Length = 705

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +3

Query: 234 SAIS-RTIPSIKTLQKLMKKIPV-EPGLNTAVLDHLKKLAPIKKIRAKLCSLVFDE 395
           S+IS + +  I T    +K+I + + G+N A L HL K + +  ++  LCS + D+
Sbjct: 444 SSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDK 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,643
Number of Sequences: 37544
Number of extensions: 278921
Number of successful extensions: 630
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)