Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120509.Seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   3.6  
SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)                   29   4.8  
SB_16050| Best HMM Match : zf-RanBP (HMM E-Value=4.9)                  29   4.8  
SB_7707| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22)        28   8.3  

>SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 514 GIGRKIKQPLAFYFIRGTVSSEKLAVLIKDIIKEIT--NSGFQVLSTICD 657
           G+    ++PL    IRG V+SE+ A   K + K +T  ++G +    +CD
Sbjct: 552 GLNPCTRKPLTNNRIRGRVNSERAATPNKPVYKHVTFISNGLRRSQRVCD 601


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 1   VTPRKRKLLSELRKTKC-TLASLKKSAKLIDNLSSEFLKEIVTSALINQKRKSQGKR 168
           V  +++  +SE+RK +      +KKS +L++    E  + I+    + ++ K QG+R
Sbjct: 236 VLTKQKSSVSEVRKRELDAYTQVKKSCELVEQAQLEKAQAIIQVQQLKEELKKQGER 292


>SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)
          Length = 894

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 488 NHALVFMYKVLGEKLNNRWHSI 553
           NH L F Y  L +++N+ WH +
Sbjct: 140 NHCLTFGYHSLNQRINSTWHCL 161


>SB_16050| Best HMM Match : zf-RanBP (HMM E-Value=4.9)
          Length = 520

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 157 QGKRWTIKNKISALAIFKRSPKAYRYLRYLA 249
           Q +RW I    S L+++++   ++RY RY A
Sbjct: 490 QRQRWEISGASSLLSVYRKEIPSWRYARYEA 520


>SB_7707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 107 NSDDKLSISFALFFND---ANVHFVFLNSLKS 21
           NSDDK+ + F + FND   AN+    + +LK+
Sbjct: 21  NSDDKIVVKFGVLFNDDRCANIFEALVGTLKA 52


>SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22)
          Length = 416

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 213 FTKSLPISAISRTIPSIKTLQKLMKKIPV 299
           F KS  +   +R +PS+ TL  LM+K PV
Sbjct: 103 FAKSSAVIFHARDMPSVTTLNDLMRKKPV 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,602,420
Number of Sequences: 59808
Number of extensions: 335830
Number of successful extensions: 808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)