Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120509.Seq
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48716-6|CAH04739.1|  238|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z48716-5|CAA88598.2|  264|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z49910-7|CAA90124.4|  384|Caenorhabditis elegans Hypothetical pr...    28   7.3  
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    28   7.3  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   7.3  
Z73905-4|CAI91175.1|  536|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z48716-6|CAH04739.1|  238|Caenorhabditis elegans Hypothetical
           protein F59B10.4b protein.
          Length = 238

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 489 FASSSFLSYP*SINPSTLSVVRYKLTFLLTL-FHQRLANIIL 367
           FA   +L YP S  PSTL +V + L  L  L  + +++++IL
Sbjct: 30  FAVMLYLIYPDSFLPSTLFIVNFSLVLLALLGINSKVSSMIL 71


>Z48716-5|CAA88598.2|  264|Caenorhabditis elegans Hypothetical
           protein F59B10.4a protein.
          Length = 264

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 489 FASSSFLSYP*SINPSTLSVVRYKLTFLLTL-FHQRLANIIL 367
           FA   +L YP S  PSTL +V + L  L  L  + +++++IL
Sbjct: 56  FAVMLYLIYPDSFLPSTLFIVNFSLVLLALLGINSKVSSMIL 97


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 327 DHLKKLAPIKKIRAKLCSLVFDEIALKERLTYSEPQIKWKGLSIMDMRGK 476
           DH K  A    + ++LC+L  ++  +    T +E  I    + + D+RGK
Sbjct: 103 DHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVNDLRGK 152


>Z49910-7|CAA90124.4|  384|Caenorhabditis elegans Hypothetical
           protein F44G4.1 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +1

Query: 19  KLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEIVTSALINQKRKSQGKRWTIKNKISAL 198
           KL   L K + + A+  K+     +L      + +  AL   KR  QG+R  I++++   
Sbjct: 71  KLQELLEKYEASKATATKTKDDFKHLPKSQRGKALKRALRKDKRARQGERAQIRDELGES 130

Query: 199 AIFKRSPKAYRYLR 240
           A  K  PK    +R
Sbjct: 131 APQKEVPKTIESMR 144


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
            factor) relatedprotein 8 protein.
          Length = 2329

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 106  FLKEIVTSALINQKRKSQGKRWTIKNKISAL 198
            FLK I TS    QKR SQ  +W    +++AL
Sbjct: 1811 FLKIIHTSVWAGQKRLSQLAKWKTAEEVAAL 1841


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 327 DHLKKLAPIKKIRAKLCSLVFDEIALKERLTYSEPQIKWKGLSIMDMRGK 476
           DH K  A    + ++LC+L  ++  +    T +E  I    + + D+RGK
Sbjct: 103 DHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVNDLRGK 152


>Z73905-4|CAI91175.1|  536|Caenorhabditis elegans Hypothetical
           protein C32C4.7 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 252 IPSIKTLQKLMKKIPVEPGLNTAVLDHLKKLAPIKKIRAKLCS-LVFDEIALKERL 416
           IPSIK  QK+  KI      + ++LD LK     +K  A +   L F+ IA+++ L
Sbjct: 111 IPSIKLFQKMFHKIYENLRADLSILDSLKD----RKFDAMIYEVLAFNAIAIQQYL 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,397,870
Number of Sequences: 27780
Number of extensions: 279566
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)