Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120509.Seq
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH...    32   0.42 
At5g43880.1 68418.m05366 expressed protein                             31   0.73 
At1g03830.1 68414.m00364 guanylate-binding family protein contai...    31   0.73 
At1g29240.1 68414.m03576 expressed protein contains Pfam profile...    30   1.3  
At5g02070.1 68418.m00128 protein kinase-related contains eukaryo...    28   5.1  
At5g65620.1 68418.m08255 peptidase M3 family protein / thimet ol...    27   9.0  

>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
           protease GI:13183728 from [Medicago sativa]
          Length = 704

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 216 TKSLPISAISRTIPSIKTLQKLMKKIPVEPGL 311
           TKSLP S ISR    I   +KLMK +P +  L
Sbjct: 31  TKSLPFSVISRKRYQISQSEKLMKSLPSQAAL 62


>At5g43880.1 68418.m05366 expressed protein
          Length = 836

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +1

Query: 61  SLKKSAKLIDNLSSEFLKEIVTSALINQKRKSQGKRWTIKNKISALAIFKRSPKAYRYLR 240
           SL +S+  + + S +   +  +S +  +  KS+  +W++K K+S   +F RS KA +   
Sbjct: 473 SLPESSTSLGHKSLDSSNKSKSSRVPEELTKSKSLKWSLKGKVSNF-LFSRSKKASKERS 531

Query: 241 Y-LAPFRVSKHCKN 279
           Y  +P  +   C N
Sbjct: 532 YEESPEILDSRCNN 545


>At1g03830.1 68414.m00364 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 991

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 1   VTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEIVTSALINQKRKS 156
           +T +  KL +  ++   T A LKKSA  +D  SSE     +  +L+N+K +S
Sbjct: 572 ITEKAAKLATLEQQLASTRAELKKSALKVDECSSEAKDVRLQMSLLNEKYES 623


>At1g29240.1 68414.m03576 expressed protein contains Pfam profile:
           PF05097 protein of unknown function (DUF688)
          Length = 577

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/77 (31%), Positives = 41/77 (53%)
 Frame = +1

Query: 28  SELRKTKCTLASLKKSAKLIDNLSSEFLKEIVTSALINQKRKSQGKRWTIKNKISALAIF 207
           S++ + K    S+KK A  +D++S   L   V S +      S GK++  ++ + + A  
Sbjct: 305 SKVAQLKYRFQSVKKLA--LDSVSKHKLSGKVHSPV----HPSNGKKFNSESNLISAA-- 356

Query: 208 KRSPKAYRYLRYLAPFR 258
           KRS   YR+ R ++PFR
Sbjct: 357 KRSSSPYRHSRCMSPFR 373


>At5g02070.1 68418.m00128 protein kinase-related contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 657

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/57 (28%), Positives = 33/57 (57%)
 Frame = +1

Query: 19  KLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEIVTSALINQKRKSQGKRWTIKNKI 189
           K++ + R T+C    LKK+A  ID  + + L  +  SA +N++R+++     + ++I
Sbjct: 588 KMMDQERLTECIDPLLKKTANKIDMQTIQQLGNL-ASACLNERRQNRPSMKEVADEI 643


>At5g65620.1 68418.m08255 peptidase M3 family protein / thimet
           oligopeptidase family protein similar to SP|P27237
           Oligopeptidase A (EC 3.4.24.70) {Salmonella
           typhimurium}; contains Pfam profile PF01432: Peptidase
           family M3
          Length = 791

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = +3

Query: 195 ISHLQAFTKSLPISAISRTIPS-IKTLQKLMKKIPVEPGLNTAVLDHLKKLAPIKKIRAK 371
           + HL+A  + L  S +  T P  ++ L+K++ ++ V  G+    ++HLK +    ++RA 
Sbjct: 125 LQHLEAELEELEKS-VEPTWPKLVEPLEKIVDRLTVVWGM----INHLKAVKDTPELRAA 179

Query: 372 LCSLVFDEIALKERLTYSEP 431
           +  +  +++  + RL  S+P
Sbjct: 180 IEDVQPEKVKFQLRLGQSKP 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,377,676
Number of Sequences: 28952
Number of extensions: 251573
Number of successful extensions: 640
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)