Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120508.Seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    27   0.11 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   1.8  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   1.8  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   1.8  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   4.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   4.1  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.1  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   7.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.1  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 63  NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNK 236
           +T  P  + PS+P   I + + T + +PG++  T  D  +D  R +ST       YN+
Sbjct: 58  STLDPGRKSPSSPR--ISSPSSTKSGSPGFLTYTKADRDVDLFRGSSTPESPEHYYNQ 113


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 147 GYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
           G +PP      + TS SNS +S  +     S E
Sbjct: 315 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNE 347



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 8   NHKSTNKKYDR*TWQFLLQHPSAAAE 85
           NH++ N+ Y R     LL+H    A+
Sbjct: 99  NHQNYNEPYQRTHENMLLRHHEEVAD 124


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 147 GYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
           G +PP      + TS SNS +S  +     S E
Sbjct: 104 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNE 136


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 147 GYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
           G +PP      + TS SNS +S  +     S E
Sbjct: 104 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNE 136


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +3

Query: 57  YY--NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNST 206
           YY  N   PP+ YP +       NA  Y ++   +P  T   +    R+  T
Sbjct: 35  YYENNQALPPITYPPSDWNCPQYNAPPYMSSVLQLPTVTEIQETQPQRTKPT 86


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +3

Query: 57  YY--NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNST 206
           YY  N   PP+ YP +       NA  Y ++   +P  T   +    R+  T
Sbjct: 26  YYENNQALPPITYPPSDWNCPQYNAPPYMSSVLQLPTVTEIQETQPQRTKPT 77


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = +3

Query: 600 GVKTLWPRRPNNSAWPSSTWWRNR 671
           G++T W +  + S+W  ++ W  +
Sbjct: 278 GLETSWGKSRDESSWFYNSGWERK 301


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 8   NHKSTNKKYDR*TWQFLLQHPSAAAE 85
           NH++ N+ Y R     LL+H    A+
Sbjct: 99  NHQNYNEPYQRTHENMLLRHHEEVAD 124


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 8   NHKSTNKKYDR*TWQFLLQHPSAAAE 85
           NH++ N+ Y R     LL+H    A+
Sbjct: 99  NHQNYNEPYQRTHENMLLRHHEEVAD 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,866
Number of Sequences: 336
Number of extensions: 3537
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)