Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120508.Seq
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 30 0.27
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.63
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 28 1.1
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 1.9
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 27 3.3
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 27 3.3
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 4.4
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 25 7.7
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 7.7
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 7.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 7.7
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 7.7
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 30.3 bits (65), Expect = 0.27
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 21 QIKSMTDERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSR 194
QI +RGN + +PPPPL Y P AT NA NNA TT N +
Sbjct: 48 QIPLYWQQRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYA 104
Query: 195 SNSTNSVA 218
++ ++ +A
Sbjct: 105 NDYSSELA 112
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.63
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +3
Query: 63 NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSK 242
+TPPP +PS T+ T++ + +P + + K ++ S + A S
Sbjct: 690 STPPPTTSFPSTFTTSFITSSSLSS-----IPNNSTEVKTASTSSGTEIKTASTSSGSSS 744
Query: 243 EPTLTPANLFGTT 281
+ TPA+ TT
Sbjct: 745 SSSYTPASSTSTT 757
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Frame = +2
Query: 257 AGESIWY------NKCVDFVQKIIRYYRCNDMSELSPLMIHFINT 373
AGE++ Y N+C+ F+ + R ++C D +E L+ F+NT
Sbjct: 497 AGENVKYLLPVVVNRCI-FLARNFRIFKCMDWAEKVRLLWEFVNT 540
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 129 TYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLTPANLFGT 278
T N AP V +D+ + + NS P N+ +P L PAN F T
Sbjct: 27 TENLAPAVVD-NVKDDLIVSKGGNSRELARNVPVNEMVQPALGPANPFVT 75
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 149 VRAAYDARQQNGHEPQQQHK-LGSDRTVQQEQRTDAHAGESI 271
+ A Y ++ ++P Q K +G+D V+ EQ+ D+H ESI
Sbjct: 76 IDAIYQNIEKTTNKPAQLWKAVGNDEVVESEQQ-DSHDAESI 116
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 192 RSNSTNSVAIAPYNKSKEPTLTPANLFGTTNVWILFKKLLDITGAM 329
R T + + K++E P + GT+NV+ K L+++G +
Sbjct: 176 RDPHTQEIVLQGLMKAQEDFKGPGSFLGTSNVYFAAKYNLNVSGTV 221
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 75 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 218
PP+ P+ + TN+ ++A G+ PP K++ RS+S N A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 15 RVQIKSMTDERGNFYY-NTPPPPLRYPS 95
R+Q+ T G++ + N PPP LR P+
Sbjct: 63 RLQLYKKTISEGDYNFDNVPPPELRTPT 90
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 161 YDARQQNGHEPQQQHKLGSDRTVQQEQR 244
Y QQN E Q HK D+ QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -3
Query: 575 NFCAYAGSEFSTNDA*NIF---ESLAGTRPRCLVPTLFATES 459
+ CA+ + ++ A N+F E L P C VP+ +TES
Sbjct: 653 DICAFPNAGLNSIYARNLFNTVEQLQSVLPNCHVPSNLSTES 694
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 45 RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 140
RG Y N PP Y SN ++YNN
Sbjct: 953 RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 550 NLAQTMPEIYSNRSQGLGRVALSQLFLQPN 461
N+ MPEI ++ G R+ L F QPN
Sbjct: 435 NVVVYMPEIDKDKLGGTMRLGLRPTFFQPN 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,068
Number of Sequences: 5004
Number of extensions: 53698
Number of successful extensions: 223
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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