Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120508.Seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0082 + 625198-625719 33 0.28
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 32 0.49
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 31 0.64
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 31 0.64
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 31 0.85
07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961 31 1.1
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 31 1.1
07_03_1246 + 25157691-25158000,25158099-25158376 29 2.6
10_08_0938 + 21693629-21694360,21694558-21694613,21694836-21694869 29 3.4
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023 29 3.4
05_03_0069 + 8004235-8004350,8004927-8005215,8005314-8005375,800... 29 3.4
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 29 3.4
04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058... 29 3.4
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117... 29 3.4
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 29 3.4
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 29 4.5
02_03_0349 + 18010414-18014283 29 4.5
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 29 4.5
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 28 7.9
>01_01_0082 + 625198-625719
Length = 173
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 680 CTSPIPPPCTGRPS*VVWPPRPKRLYPNISAPPL 579
CT PPP P+ V +PP P YP S PP+
Sbjct: 48 CTYASPPPPDVLPTPVYYPPPPPVYYPPPSPPPV 81
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 60 YNTPPPPLRY-PSNPATAIFTNAQTYN-NAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYN 233
YN P Y P++P+ + + + +Y+ +P Y P + N TS S S S + +P +
Sbjct: 1697 YNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTS 1756
Query: 234 KSKEPT 251
S PT
Sbjct: 1757 PSYSPT 1762
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 57 YYNTPPPPLRYPSNPATAIFTNAQTYN-NAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYN 233
Y +P P P++P+ + + +Y+ +P Y T + TS S S S + +P +
Sbjct: 1704 YSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTS 1763
Query: 234 KSKEPT 251
S PT
Sbjct: 1764 PSYSPT 1769
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 110 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSD 220
H HQ+ +QQ RAA +QQ + QQQ +L D
Sbjct: 100 HQHQQIQMQQMLLQRAAQQQQQQQQQQQQQQQQLHRD 136
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 119 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTD 250
Q +QQ RAA +QQ + QQQ + + QQ+QR D
Sbjct: 120 QHIQMQQMLLQRAAQQQQQQQQQQQQQQQQQQQQQQQQQQQRRD 163
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 31.1 bits (67), Expect = 0.85
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = -1
Query: 502 LGRVALSQLFLQPNQVAYHGLLRFKPLYHVYVDRVRVDAHVTNSVYKMNHERTKF*HVIA 323
+GR+ P+ A GLLR P++ V++D VRV + +Y++ + K+ +A
Sbjct: 247 VGRLVKGSSKPHPSLPARGGLLRTAPVHEVHLDLVRVS---SGKIYRLRNPSRKY---LA 300
Query: 322 PVISNNFLNKIHTFVVPNRFA 260
+ S + N + PN +A
Sbjct: 301 SLSSYDSSNPTKDWGFPNIYA 321
>07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961
Length = 221
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 69 PPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDT 188
PPPP P +P A+F +A+ +P P+TR ++ T
Sbjct: 5 PPPPSAPPPSPPRAVFPSARCCLPSPHRFLPSTRRKRLVT 44
>03_02_0594 -
9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 272 WYNKCVDFVQKIIRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNV-VKRFESE 439
WY +C+D Q+ +R RC+D + P + + ++ C ++ + V RF +E
Sbjct: 473 WYRECLDLFQEFVR-VRCSDGDGVGPNGV-TVTSVLHACAQLKVVDFGIGVHRFAAE 527
>07_03_1246 + 25157691-25158000,25158099-25158376
Length = 195
Score = 29.5 bits (63), Expect = 2.6
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = -1
Query: 604 TPTYQRHRCKIFARTPAANLAQTMPEIYSNRSQGLGRVALSQLFLQPNQVAYHGLLRFKP 425
+P R + KIF T A L T+P I + R G+GR A+ + + +A GLL
Sbjct: 40 SPVSPRSQIKIFF-TRAQRL--TLPSISAQRDLGVGRGAVKGVLALTSSLA--GLL---- 90
Query: 424 LYHVYVDRVRVDAHVTNSVYKMNHERT-KF*HVIAPVISNNFLNKIHTF 281
L +Y + R D+ K E T + VI P + F K TF
Sbjct: 91 LGFLYFKQDRDDSAAGEETRKEEEEVTVNWRDVIEPSVMARFTRKDGTF 139
>10_08_0938 + 21693629-21694360,21694558-21694613,21694836-21694869
Length = 273
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -3
Query: 674 SPIP-PPCTGR--PS*VVWPPRPKRLYPNISAPP 582
SP P PP TGR P+ V PPRP L+ SA P
Sbjct: 29 SPSPSPPGTGRVRPAPVSLPPRPPLLWAAASAAP 62
>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
Length = 620
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +2
Query: 59 LQHPSAAAEVSL*SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQE 238
L SA A V+L S H H RA A + +N P G+DR+ + E
Sbjct: 540 LPRRSACASVALKSSGCHHHVRAGAAAAAHGSVRTSRQSRNNAPPMAPTIRGADRSSEGE 599
Query: 239 QR 244
+R
Sbjct: 600 RR 601
>05_03_0069 +
8004235-8004350,8004927-8005215,8005314-8005375,
8005516-8005602,8005667-8005723,8005940-8006004,
8006292-8006320
Length = 234
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 72 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPT 251
PPP + NP+T I + + P P + +K T +++ST AI S E T
Sbjct: 146 PPPAPHTDNPSTTIHNTGASSKSTP---PEISLADKTPTEKTSSTRKRAIDFTKDSIEET 202
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 72 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPT 251
PPP + NP+T I + + P P + +K T +++ST AI S E T
Sbjct: 293 PPPAPHTDNPSTTIHNTGASSKSTP---PEISLADKTPTEKTSSTTKRAIDFTKDSIEET 349
>04_04_1393 -
33204699-33204806,33204927-33205164,33205581-33205825,
33206229-33206339,33206645-33206743,33207684-33207731,
33207882-33207999,33208085-33208115,33208700-33208806,
33209644-33209725,33210010-33210104,33210579-33210664,
33211074-33211195,33211613-33211824,33212362-33212510,
33212755-33212982
Length = 692
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 302 KIIRYYRCNDMSELSPLMIHFINTIRDM 385
KII Y+ N+++++S L HFI+ + D+
Sbjct: 599 KIIESYKSNNVNQVSNLCQHFIDLVNDL 626
>03_05_0898 +
28610123-28610203,28611190-28611271,28611666-28611721,
28612253-28612366,28612484-28612546,28612633-28612752,
28612850-28612950,28613097-28613156,28613243-28613342,
28613421-28613575,28613661-28613756,28614269-28614403,
28614510-28614573,28614648-28614729,28615038-28615213,
28615302-28615378,28615637-28615769,28615939-28616055,
28616394-28616398,28616564-28616684,28616711-28617751
Length = 992
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 15 RVQIKSMTDERGNFYYNTPPPP---LRYPSNPATAIFTNAQTYNNAPG 149
+V I+S+ RG FY+N P L + P T +F + + PG
Sbjct: 821 KVPIRSIAACRGKFYFNATPESVGVLEFTPTPTTPVFGSIAIADPLPG 868
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Frame = +3
Query: 69 PPPPLRYPSNPATA----IFTNAQTYNNAP-------GYVPPTTRDNKMDTSRSNSTNS- 212
PPPP P +PAT F AQ N P ++PP + TS S S
Sbjct: 721 PPPPAAAPISPATTPKEPPFQQAQANQNMPRQAAAPREHLPPPPPLTTLPTSDSGSAKER 780
Query: 213 VAIAPYNKSKEPTLTPANLFGTTN 284
+ P + + P +T +LF T+
Sbjct: 781 LPPTPKKQPEPPVVTLDDLFRKTH 804
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 45 RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTS 191
+G+ Y PPPP P A+F + Y PPT R+ ++ S
Sbjct: 665 KGSTCYPPPPPPSSTPPVEPVAVFPPPPSPACGVYYPPPTVREPVINRS 713
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +2
Query: 290 DFVQKIIRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNVVKRFESEETMIRHLIRL 469
D + ++ R N+ + +S NTIR +C+D I++ VV++ S+ +R LI
Sbjct: 536 DLLHELARSASVNECARVSISSEKIPNTIRHLCLDV--ISLTVVEQI-SQSKKLRTLIMH 592
Query: 470 QKELGQGNAAESLRAI 517
+E Q L+ +
Sbjct: 593 FQEQDQAEQEHMLKKV 608
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 423 SGLNRRRP*YAT*FGCKKSWDKATRPSPCERFEYISGIVCAKFAA 557
+G R++P A CK W++ + SP F+ +S + AK+ A
Sbjct: 153 AGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKA 197
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Frame = +3
Query: 69 PPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDN---KMDTSRSNSTNSVAIAPYNKS 239
PPPP +PSN + Y P ++PP +D+ D I+ Y +
Sbjct: 310 PPPPWGHPSN----VPPGGPGYGGNPQFMPPRPQDHYYPPPDVPPVEKQPHYGISSYGRD 365
Query: 240 KEPTLTP 260
PT P
Sbjct: 366 APPTGAP 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,323,334
Number of Sequences: 37544
Number of extensions: 405664
Number of successful extensions: 1716
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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