Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120507.Seq
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q59NG4 Cluster: Putative uncharacterized protein; n=1; ...    36   0.76 
UniRef50_Q05FQ6 Cluster: Seryl-tRNA synthetase; n=1; Candidatus ...    33   5.3  
UniRef50_Q8I5C8 Cluster: Putative uncharacterized protein; n=3; ...    33   5.3  

>UniRef50_Q59NG4 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 101

 Score = 36.3 bits (80), Expect = 0.76
 Identities = 16/54 (29%), Positives = 33/54 (61%)
 Frame = +3

Query: 180 FLCYLIVFYMMCNVTSYLLHAIQYVCRVCIYWELSLPLSYFSLHFHIMPETWVS 341
           +L +L+  Y   +V+S ++   Q +CRV  ++ +++PLSYF   F+ + E  ++
Sbjct: 25  YLFFLLASYSTLHVSSVMI--TQNLCRVEFHYRMTVPLSYFCRSFYYLQEEMIT 76


>UniRef50_Q05FQ6 Cluster: Seryl-tRNA synthetase; n=1; Candidatus
           Carsonella ruddii PV|Rep: Seryl-tRNA synthetase -
           Carsonella ruddii (strain PV)
          Length = 336

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 192 LIVFYMMCNVTSYLLHAIQYVCRVCIYWELSL-PLSYFSLHFHIMPETWVSIFPKHMKVS 368
           LIVFY MC+   Y+L ++    ++       L P +++S  F I    W+ I    + + 
Sbjct: 221 LIVFYNMCSTIFYILKSLNIKFKIIKINNFELNPNTFYSFDFEIYINNWLEISSLSLCLD 280

Query: 369 RP 374
           +P
Sbjct: 281 KP 282


>UniRef50_Q8I5C8 Cluster: Putative uncharacterized protein; n=3;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 1834

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
 Frame = +3

Query: 39   SIFIDLVFVKISLNTNKIVNEKNS--S*LKYWQSFHIDFTK--MMPGKL*Q---FLCYLI 197
            SIF + +F  ++ N   IVNE  +    +KY++  H+  T+  + P  +     F   ++
Sbjct: 1671 SIFAN-IFYYLNNNITAIVNESFNLEENIKYYEHVHVKKTEYTLEPYNIIDKTVFYFQIV 1729

Query: 198  VFYMMCNVTSYLLHAIQYVCRVCIYWELSLPLS 296
            VFY++ N  + L+    Y+  VC ++   L +S
Sbjct: 1730 VFYLIINTNNVLMDNSNYLENVCSFFSKCLKVS 1762


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,444,712
Number of Sequences: 1657284
Number of extensions: 12228460
Number of successful extensions: 22655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22650
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)