Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120507.Seq
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.5  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    28   1.5  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   6.2  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   6.2  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   8.2  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   8.2  

>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 188 LFNSILHDVQCYVIFAPCHPVCV-SRLHLLGTLTSF 292
           LFN +  D QCY+ + P   VC+ S   L     SF
Sbjct: 158 LFNQVRVDCQCYIHYLPKLAVCILSNFFLQDAYISF 193


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 63  VKISLNTNKIVNEKNSS*LKYWQSFHIDFTKMMPGK 170
           V + LNT +I+N K+S  + YW     D T   PG+
Sbjct: 507 VMLMLNTKRIMNPKDSDAVGYWIEAEDDST-FFPGR 541


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = -2

Query: 472 YVLLNVKVSFNRCLPS*S*RSKFQR-LSSHSDFRGLETFMCFGNIETQVSGIIWK*RLK* 296
           Y +L VKV+ N  + +   R+ +++ + S SD    +  + F  +ET++ G I + RL  
Sbjct: 628 YNVLLVKVALNYGVLAT--RTVYEKAIESLSDSEVKDMCLRFAEMETKL-GEIDRARLIY 684

Query: 295 LKGSESSQ*MQTRHTYWMAWSKYDV 221
           + GS+     +    YW AW ++++
Sbjct: 685 IHGSQYCD-PRVETDYWKAWQEFEI 708


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 186  CYLIVFYMMCNVTSYLLHAIQYVCRVCIY 272
            CY +V  M C      +H +  VC +C++
Sbjct: 1256 CYSLVPRMSCTFCCLSIHGLCIVCGLCLH 1284


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 247 SMCVAFAFTGNSHFL*VISVFTSILCLRPGFQY 345
           S C A A TGN  +  +IS FT  +    GF+Y
Sbjct: 401 SKCAAVATTGNWLWGFLISFFTPFITNSIGFKY 433


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 21  YMQLHISIFIDLVFVKISLNTNKIVNEKNSS*LKYWQSFHIDFTKMMPGKL*QFLCYLIV 200
           Y    +SIF    F  + +N   ++ E  S  L  +Q  H    +M+P  + +F    I 
Sbjct: 86  YSYERVSIFWLPYFRSLGVNVPIVLCENKSEDLDNYQGLHTIEHEMIP-LINEF--KEIE 142

Query: 201 FYMMCNVTSYL-LHAIQYVCRVCIYWELS 284
             ++C+    + ++ + Y+CR C+ + ++
Sbjct: 143 ACILCSALEKINVNELFYMCRACVIYPIT 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,071
Number of Sequences: 5004
Number of extensions: 57995
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)