Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120507.Seq
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22203| Best HMM Match : 7tm_1 (HMM E-Value=8e-08)                   31   0.93 
SB_355| Best HMM Match : zf-UBR1 (HMM E-Value=2e-20)                   31   1.2  
SB_5452| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  

>SB_22203| Best HMM Match : 7tm_1 (HMM E-Value=8e-08)
          Length = 479

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 144 DFTKMMPGKL*QFLCYLIVFYMMCNVTSYLLHAIQYV-CRVCIYWELSLPLSYFSLHFHI 320
           D+ KM  G L  F+ +   FY    ++ +L+++   + C    YW L+  ++Y    F  
Sbjct: 358 DYRKMRVGLLMIFIAFFTPFY--ATISYFLINSTSIMSCTFIFYWRLARMMTYVYSSFSP 415

Query: 321 MPETWVSIFPKHMKV 365
           +     +  P H+++
Sbjct: 416 VIYLLFNTKPSHLRI 430


>SB_355| Best HMM Match : zf-UBR1 (HMM E-Value=2e-20)
          Length = 949

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 239 CHPVCVSRLHLLGTLTSFKLFQSSLPYYA 325
           CH VCV   H L  +   KLF S LP+ A
Sbjct: 572 CHDVCVVMAHALHHVMQPKLFNSFLPFMA 600


>SB_5452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 186 CYLIVFYMMCNVTSYLLHAIQYVCRVCIYWELSLPLSYFS 305
           C  I+  ++C+ ++  +  +  VCR C+Y +L   + Y +
Sbjct: 46  CMYILPDVVCDFSNVTVQGVLVVCRTCVYEKLESKVEYLN 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,035,936
Number of Sequences: 59808
Number of extensions: 389744
Number of successful extensions: 789
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)