Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120507.Seq
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical
           protein F56D6.7 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 189 YLIVFYMMCNVTSYLLHAIQYVCRVCIYWELSLPLSYFSLH 311
           Y+++ Y+ C +   LL+A++        WELS  +SY+SL+
Sbjct: 152 YILLLYLGCCLKYALLYALESWFGGGRGWELSYGISYYSLY 192


>Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical
           protein M05B5.2 protein.
          Length = 128

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 408 SFNDCQAIPILGVWKPSC 355
           ++N C   P +G WKPSC
Sbjct: 64  NYNWCCTFPYMGSWKPSC 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,984
Number of Sequences: 27780
Number of extensions: 320343
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)