Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120507.Seq
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containi...    30   1.8  
At3g14067.1 68416.m01775 subtilase family protein contains simil...    29   3.1  
At5g35730.1 68418.m04274 EXS family protein / ERD1/XPR1/SYG1 fam...    27   9.4  

>At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 660

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 650 YMTSIHNCYAESIYGTCTCL 709
           YMT I  CYA+S +G+C  L
Sbjct: 295 YMTMIQACYADSDFGSCVAL 314


>At3g14067.1 68416.m01775 subtilase family protein contains
           similarity to cucumisin-like serine protease GI:3176874
           from [Arabidopsis thaliana]
          Length = 777

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 450 LVSTGVYPVNPKEASFNDCQAIPILGVWKPSCVLG 346
           ++ TG++P +P   SF+D    PI   WK  C +G
Sbjct: 140 VLDTGIWPEHP---SFSDSGLGPIPSTWKGECEIG 171


>At5g35730.1 68418.m04274 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mus spretus] GI:6093318;
           contains Pfam profile PF03124: EXS family
          Length = 457

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 273 WELSLPLSYFS-LHFHIMPETWVSIF 347
           +  ++P+ + S L +H+MPE+W S +
Sbjct: 300 YSTAVPVIFLSALKYHVMPESWTSFY 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,097,624
Number of Sequences: 28952
Number of extensions: 276707
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)