Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120504.Seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   0.84 
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    28   1.5  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    28   1.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.6  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   3.4  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    27   3.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   4.5  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   4.5  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   4.5  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   7.9  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 409  IDTQRHFAH*FTI-NSFVIFSNLLGAISHSHAFYKRLTATFSRKKSFGRHIAVLSICGNL 233
            ID Q H +   T+ NS V+ +NL    +  H+F+K   + FS K   GR+  V+  C  L
Sbjct: 1435 IDLQAHESFITTLLNSAVVEANLENQFNEVHSFWKN--SYFSFKSFKGRNYIVVG-CQEL 1491

Query: 232  YD 227
             D
Sbjct: 1492 ID 1493


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 416 YYYTFRIMSDNKIQEYYGDSQS 481
           Y+Y   I  +N IQE+Y D +S
Sbjct: 623 YFYQLEIAEENAIQEWYSDPRS 644


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 84  IFKIGFLKHCSKRVVKRCVVGHIYNQFPPR*RTVLWRHFDFVAIQYLPSYRFPHI 248
           +++ G+++  SKRV K   V  + N      +   W H D   ++YLP +++ H+
Sbjct: 174 MYEEGWIEFESKRVAKS--VAELLNTNQIGGKKSSWYHDDIWNMKYLPKFKWHHL 226


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = -1

Query: 242  WESIRWQILNGDEIEVSPEHRSLAWRELIINVANN------TPLDNTFRTMFQKADF 90
            ++S++WQ +  DE +      S  W+ L+     N      TP+ NT + ++    F
Sbjct: 966  FQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHF 1022


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/72 (22%), Positives = 34/72 (47%)
 Frame = +2

Query: 287 GESSGEPLIKRMAMANSPKKIRENYKRINGKLMGKMTLSIDNEYYYTFRIMSDNKIQEYY 466
           G S+ +P++ R    N   +  E YK+    ++GK   +++N+   T R +S  + +   
Sbjct: 314 GSSNSKPVVVRPKKRNILTEELEKYKKSKKVVLGKRK-NLENDEESTLRALSSFQSKIRN 372

Query: 467 GDSQSFKDMEEG 502
            + +   D + G
Sbjct: 373 AEDEDVMDSQYG 384


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 179 SLAWRELIINVANNTPLDNTFRTMFQKADFEN 84
           +L W+E + NV+NNT L      +    +F N
Sbjct: 225 ALEWKEKVYNVSNNTLLSEAHYKLALALEFTN 256


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = -1

Query: 287 QKKIFWSPYCCVVNMWESIRWQILNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTM 108
           Q +++ S Y    N  ESI   I   ++ +   E      R   I + N   LDN F + 
Sbjct: 757 QVQLYQSCYKLFKN--ESISMAIKYREQEQSGLEFLVKGKRSKNIFLTNLVKLDNPFNSF 814

Query: 107 FQKADFENFDYNTPIVYNLKTK 42
             +    N+    P++Y+L+TK
Sbjct: 815 GDEQLDYNYRKRIPMIYDLRTK 836


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 290 LQKKIFWSPYCCVVNMWESI-RWQILNGDEIEVS-PEHR 180
           L+K++FWS YC    +  S+ R + L   EI++  PE+R
Sbjct: 440 LRKRLFWSVYCMERKIGISLGRPESLVRSEIDIHFPEYR 478


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 164 ELIIN-VANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKTLTMYNER 18
           +L+ N    N PL+++  +     D ++ + +TP+V+ + TK   +  +R
Sbjct: 520 QLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPIDTKVSNVGQKR 569


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 370 NSFVIFSNLLGAISHSHAFYKRLTATFSRKKSF 272
           +S++ +S++   +SHSH  + R+    +  K+F
Sbjct: 621 DSYITYSDIFSPLSHSHKDWFRIHTEENSSKNF 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,063
Number of Sequences: 5004
Number of extensions: 60706
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)