Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120504.Seq
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     33   0.28 
12_02_0189 + 15165485-15168694                                         28   8.1  

>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = +3

Query: 69   CIVVEIFKIGFLKHCSKRVVKRCVVGHIYNQFPPR*RTVLWRHFDFVAIQYLPSYRFPHI 248
            C   EI +  +L H SK  +  C   H++N  PP   + +        +  LP+ +    
Sbjct: 1022 CQKFEIERKSWLSHLSKLTIHDCPHLHVHNPLPP---STIVLELSIAKVSTLPTLKGSSN 1078

Query: 249  DNTAIWRPKD 278
                IW P D
Sbjct: 1079 GTLTIWLPND 1088


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 218  LNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFD 78
            LNG  ++      +L+WR+++  V NN   D   R  F   D  + D
Sbjct: 913  LNGCNLKYYESKLNLSWRKVLKEVMNNKESDENNRWEFLNPDASDSD 959


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,244,754
Number of Sequences: 37544
Number of extensions: 344052
Number of successful extensions: 763
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)