Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120504.Seq
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF077541-5|AAC64629.1|  380|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    28   7.3  
AF016427-11|AAB65354.2|  108|Caenorhabditis elegans Hypothetical...    28   7.3  

>Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical
           protein F56A8.1 protein.
          Length = 1049

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/76 (30%), Positives = 40/76 (52%)
 Frame = +2

Query: 293 SSGEPLIKRMAMANSPKKIRENYKRINGKLMGKMTLSIDNEYYYTFRIMSDNKIQEYYGD 472
           S  EP  K M    S K   E    I  +L  + +LS++ E +Y F+ +  NKI++Y+G+
Sbjct: 207 SKEEPYFKAM-QNGSVKAYNEFISEI--ELDPRRSLSLNWERWYKFQPL--NKIRDYFGE 261

Query: 473 SQSFKDMEEGKCMTLV 520
             ++    +G  +TL+
Sbjct: 262 QIAYYFAWQGTFLTLL 277


>AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical
           protein ZK250.2 protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 145 PTTHRLTTRLEQCFKKPILKISTTIHRLC 59
           PTTH  T   E+    P++++ST   ++C
Sbjct: 54  PTTHAETGMTEEMMTTPVVEVSTVTEKVC 82


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
 Frame = +1

Query: 418 LLHF*NNVRQQDSGILRRFAIFQ------RHGGRQVHDISLNYVKTKFSQMIQINEYKEC 579
           L H    + + D G+L  + +++      R+   +  DI  +++K    Q      +K+C
Sbjct: 450 LQHVSELIEKTDVGLLTNYVLWRVVQSNVRYLDERFEDIKQDFLKVMTGQQQSPPRWKDC 509

Query: 580 EMEIETAIPLS--AYLTNKHFENED 648
                T +PL+  A     HF+  D
Sbjct: 510 AQVPSTVLPLAAGAIYVQAHFQESD 534


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
 Frame = +1

Query: 418 LLHF*NNVRQQDSGILRRFAIFQ------RHGGRQVHDISLNYVKTKFSQMIQINEYKEC 579
           L H    + + D G+L  + +++      R+   +  DI  +++K    Q      +K+C
Sbjct: 450 LQHVSELIEKTDVGLLTNYVLWRVVQSNVRYLDERFEDIKQDFLKVMTGQQQSPPRWKDC 509

Query: 580 EMEIETAIPLS--AYLTNKHFENED 648
                T +PL+  A     HF+  D
Sbjct: 510 AQVPSTVLPLAAGAIYVQAHFQESD 534


>AF077541-5|AAC64629.1|  380|Caenorhabditis elegans Hypothetical
           protein Y23H5A.4 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +1

Query: 121 VLSSGVLLATFIINSLHANERCSGDTSISSPFSICHRIDSHILTTQQYGDQKIFFW 288
           V+ S + +  ++IN  +A   C+  TS+  P    +R+ ++ +T +Q     +F+W
Sbjct: 61  VILSALTMCLYLINGEYAQTICTALTSV-PPALFSYRVLTNQMTDKQGYHSILFYW 115


>Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical
           protein F58B3.4 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 559 INEYKECEMEIETAIPLSAYLTNK 630
           + EYKE EM+ ET   +  YL NK
Sbjct: 268 VEEYKEDEMDDETRTAVREYLVNK 291


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +1

Query: 484 QRHGGRQVHDISLNYVKTKFSQMIQINEYKECEMEIETAI-PLSAYLT-NKHFENEDSVN 657
           +R G  ++H   L+      ++ I IN+Y +  +  E  + P   + T NK       +N
Sbjct: 409 ERIGETKIHKYILSKYNIDINKYIDINKYNDIIITHENTVNPTVEFNTINKEIVGSKKIN 468

Query: 658 IIVKSNLFTR 687
           I++  +L+ +
Sbjct: 469 ILLPKHLYKK 478


>AF016427-11|AAB65354.2|  108|Caenorhabditis elegans Hypothetical
           protein F32D1.8 protein.
          Length = 108

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +2

Query: 266 ATKRFFSGESSGEPLIKRMAMANSPKKIRENYKRINGKLMGKMTLSIDNEYYYTFRIMSD 445
           A++ F   E S EP++K         +  E+Y RI  +L+ ++   I      T    SD
Sbjct: 31  ASEYFSVSEISEEPMLKEPFDEQHDDEYWEHYARIRQELLSRVLFPIRRG--KTLEEQSD 88

Query: 446 NKIQEYYGDSQSF 484
           +  +E+  DS  F
Sbjct: 89  SDEEEWSDDSWEF 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,809,485
Number of Sequences: 27780
Number of extensions: 343111
Number of successful extensions: 860
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)