Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120504.Seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19700.1 68418.m02343 MATE efflux protein-related contains Pf...    29   2.2  
At5g60210.1 68418.m07547 cytoplasmic linker protein-related cont...    28   5.1  
At3g03640.1 68416.m00367 glycosyl hydrolase family 1 protein con...    27   8.9  
At1g68460.1 68414.m07821 adenylate isopentenyltransferase 1 / cy...    27   8.9  

>At5g19700.1 68418.m02343 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 508

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 273 LVAILLCCQYVGIYTMANTEWRRNRSVSRAPFVSVEGID 157
           L+A  +CC  + +Y +A T+W +  ++        EG+D
Sbjct: 446 LLAAQICCAAMMLYVVATTDWEK-EAIRARKLTCTEGVD 483


>At5g60210.1 68418.m07547 cytoplasmic linker protein-related
           contains weak similarity to cytoplasmic linker protein
           CLIP-170 (GI:2905649) [Gallus gallus]
          Length = 588

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = -1

Query: 203 IEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKTLTMYN 24
           +E+      + W E ++N   N P D     +  K D+E+         + +  +L    
Sbjct: 294 VELEQSKSRMVWLEALVNKLQNNPADLENHEILLK-DYESLRRGESNEMDEEVSSLRCEV 352

Query: 23  ERIRAAL 3
           ER+RAAL
Sbjct: 353 ERLRAAL 359


>At3g03640.1 68416.m00367 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to beta-glucosidase GB:AAC31962 [Arabidopsis
           thaliana]; similar to thioglucoside glucohydrolase
           (GI:984052) [Arabidopsis thaliana]
          Length = 531

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 138 VVGHIYNQFPPR*RTVLWRHFDFVAIQYLPSYRFPHIDNTAIWRP 272
           VVG     F P  +  L   +DFV I Y  S    H DN    +P
Sbjct: 320 VVGSRLPSFTPEQKEKLKGSYDFVGINYFTSTFVAHTDNVNPEKP 364


>At1g68460.1 68414.m07821 adenylate isopentenyltransferase 1 /
           cytokinin synthase (IPT1) identical to adenylate
           isopentenyltransferase (IPT1) [Arabidopsis thaliana]
           GI:14279054
          Length = 357

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +2

Query: 239 PTY*QHSNMATK--RFFSGESSGEPLIKRMAMANSPKKIRENYKRI--NGKLMGKMTLSI 406
           P++  HS+ ++    F       +PL+  + M  S  + R++   +       GK  LS+
Sbjct: 24  PSFSSHSSSSSSLLSFTKRRRKHQPLVSSIRMEQSRSRNRKDKVVVILGATGAGKSRLSV 83

Query: 407 DNEYYYTFRIMSDNKIQEYYG 469
           D    +   I++ +KIQ Y G
Sbjct: 84  DLATRFPSEIINSDKIQVYEG 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,492,285
Number of Sequences: 28952
Number of extensions: 301330
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)