Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120503.Seq
(512 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 97 5e-21
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 97 6e-21
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 96 1e-20
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 1.4
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 29 1.8
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 29 2.4
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 7.4
At5g67370.1 68418.m08495 expressed protein similar to unknown pr... 27 9.8
At4g37360.1 68417.m05291 cytochrome P450 family protein cytochro... 27 9.8
At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,... 27 9.8
At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,... 27 9.8
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 97.5 bits (232), Expect = 5e-21
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = +3
Query: 21 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 200
TVKDV + VK AAHLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 201 YIRSPVGVKTVTKIFGG 251
Y+R +GV +I+GG
Sbjct: 66 YLRGGLGVGAFRRIYGG 82
Score = 61.7 bits (143), Expect = 3e-10
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +2
Query: 251 AQRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 409
++RNG P HFC+SSG +AR LQ L+ + +V+ GGR +T+ G+RDLD++
Sbjct: 83 SKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQV 135
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 97.1 bits (231), Expect = 6e-21
Identities = 41/77 (53%), Positives = 56/77 (72%)
Frame = +3
Query: 21 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 200
TVKDV VK A+HLK++GK+++P D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65
Query: 201 YIRSPVGVKTVTKIFGG 251
Y+R +GV +I+GG
Sbjct: 66 YLRGGLGVGAFRRIYGG 82
Score = 64.5 bits (150), Expect = 4e-11
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +2
Query: 251 AQRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 409
++RNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RDLD++
Sbjct: 83 SKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQV 135
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 96.3 bits (229), Expect = 1e-20
Identities = 39/77 (50%), Positives = 56/77 (72%)
Frame = +3
Query: 21 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 200
TVKDV VK A+HLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 201 YIRSPVGVKTVTKIFGG 251
Y+R +GV +I+GG
Sbjct: 66 YLRGGLGVGAFRRIYGG 82
Score = 64.5 bits (150), Expect = 4e-11
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +2
Query: 251 AQRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 409
++RNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RDLD++
Sbjct: 83 SKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQV 135
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 365 HRPELSQQASMPPTIAKPCVQYCLM 291
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 66 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 212
+H + V P D + T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 281 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 409
FCRSSG A + + ++ + + K +DG ++L RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 30 DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 146
+VE D+ V A K+T + + E VKT F+ELA
Sbjct: 30 NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68
>At5g67370.1 68418.m08495 expressed protein similar to unknown
protein (gb|AAC18972.1)
Length = 327
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = +1
Query: 145 LRMTLIGSMCVVLPSFVIFTFAHLLESRLSPRSSVGAT 258
L+ TLIG+ +++ +FV+F FA +E ++++G+T
Sbjct: 221 LKQTLIGTGALLVSAFVLFVFATPVEDFF--KTTLGST 256
>At4g37360.1 68417.m05291 cytochrome P450 family protein cytochrome
P450 monooxygenase, Arabidopsis thaliana, PID:d1029478
Length = 499
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 276 HISAGHQAVLHARLCNRWRH*SLLRKFRTVVAFSPHKVD 392
HIS G+ V+ A WR+ LR+ + FS H+++
Sbjct: 108 HISYGNSTVVSASYSEHWRN---LRRIGALEIFSAHRLN 143
>At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 9.8
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 21 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 197
T+KD EQ IV L +VPE++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
>At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 9.8
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 21 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 197
T+KD EQ IV L +VPE++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,048,303
Number of Sequences: 28952
Number of extensions: 196319
Number of successful extensions: 463
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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