Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120502.Seq
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    24   1.1  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.7  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.9  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 567 RRDAETARQDCENARRETAQLANRMAD 647
           RR+ E A++D  +  + T  + N +AD
Sbjct: 91  RREVEKAKRDLSSVHKTTLTIENLLAD 117


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +1

Query: 106 TCSVMSSQSDLWPR-TSP 156
           TCS++   + LWP+ T P
Sbjct: 81  TCSMLCGSTQLWPQPTGP 98



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 386 LLEEVIPQVLCTGKYAPAVEMDTNDVIAKID 478
           L+ + +PQ+   G Y P +     DV A ++
Sbjct: 284 LVSQRVPQLAKNGAYGPDMIYTPEDVKALVE 314


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 304 HSAHYQIWRDSTDNE 348
           H   Y IW D +DN+
Sbjct: 30  HQQIYGIWADDSDND 44


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 106 TCSVMSSQSDLWPR 147
           TC+++ S+  +WP+
Sbjct: 67  TCNMLCSEPAIWPK 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,185
Number of Sequences: 336
Number of extensions: 4159
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)