Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120502.Seq
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0008 + 141405-142421 33 0.30
10_02_0110 - 5371536-5372882 32 0.39
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 32 0.52
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 30 2.1
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 3.7
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 29 4.8
11_01_0755 - 6343084-6345172,6345526-6346367 28 6.4
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 28 8.5
02_05_0680 - 30824652-30826010 28 8.5
01_06_1510 - 37859664-37861319 28 8.5
>06_01_0008 + 141405-142421
Length = 338
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +2
Query: 239 PNPAPSPDSVAKQGDPL-YLHPH-TVLITKSGVIQLIMK 349
P+P+PSP A+ DP +LH H T L++ IQ++++
Sbjct: 89 PSPSPSPSPAARHFDPSNFLHDHFTGLLSGGATIQIVLE 127
>10_02_0110 - 5371536-5372882
Length = 448
Score = 32.3 bits (70), Expect = 0.39
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = -2
Query: 333 ITPDLVMSTVCGCKY----SG-SPCFATLSGDGAGFGRHAQTSICTCRRRGHVLPVHNLH 169
I+PD +S + +Y +G S C+ G G R Q S+CT R R H L VH
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378
Query: 168 ILNC-WRC 148
+N W C
Sbjct: 379 AMNLRWFC 386
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 31.9 bits (69), Expect = 0.52
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 506 NQIWRKQPIAHFVCQRNDCGSTRR*NGSARLRKRAP 613
NQ+ R FVC R C RR G ARLR+ +P
Sbjct: 419 NQVLRLVLFIVFVCSRLACALLRRRRGRARLRRASP 454
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +2
Query: 329 VIQLIMKSKLPYAIELQEWLL--EEVIPQV--LCTGKYAPAVEMDTNDVIAKIDDLTQKL 496
V+ ++ + + +EL+E E ++ Q+ ++AP+VE +V A I+ +T+K+
Sbjct: 268 VMAILKNRREKFTLELKELQRKRENLLAQMGDPSANRHAPSVEHSLAEVAAHIEAVTEKI 327
Query: 497 TVANQIWRK 523
+ + W+K
Sbjct: 328 IMEEEKWKK 336
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 331 HARFGNEHCVWVQIQRVALLCHA 263
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 611 PRNGAAGQPHGGHCARRDSQTQQPAAVPQPG 703
P+ A GQP+GG+ +Q PAA P G
Sbjct: 177 PQQPAYGQPYGGYPPAPPAQGYPPAAYPPAG 207
>11_01_0755 - 6343084-6345172,6345526-6346367
Length = 976
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 425 KYAPAVEMDTNDVIAKIDDLTQKL-TVANQIWRKQ 526
+Y+P +E+D ++ K D L L +V N +WR++
Sbjct: 350 EYSPELELDLPSILEKCDGLPLALVSVGNFLWRER 384
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 222 TFEHADQIQHHLQIAWQSRATRCICTHTQCSL 317
+ EH I+H ++I WQ R +C C L
Sbjct: 255 SLEHHQAIRHAVKIGWQKYIKRYLCLAIFCML 286
>02_05_0680 - 30824652-30826010
Length = 452
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 597 CENARRETAQLANRMADIAQDVIAKPSNPQ 686
C+N E AN M D +++AKP +PQ
Sbjct: 257 CDNQCLEAMSKANAMYDALVNLVAKPVSPQ 286
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 295 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 387
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,497,028
Number of Sequences: 37544
Number of extensions: 535105
Number of successful extensions: 1846
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1845
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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