Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120502.Seq
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    32   0.47 
AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +3

Query: 132 RFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHL-QIAWQ---SRATRCICT 299
           R   +D  +SLK V+  + + V +DG+YK        +++++ Q+AW    +  TR +  
Sbjct: 93  RLSDEDFENSLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIPQLAWDISPALRTRKVAE 152

Query: 300 HTQCSLPN 323
             + S PN
Sbjct: 153 KDEISPPN 160


>AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical
           protein F09G2.4 protein.
          Length = 843

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/41 (48%), Positives = 22/41 (53%)
 Frame = +3

Query: 564 ARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQ 686
           A RDAE  R   E ARR+ AQ AN   D   D IA P  P+
Sbjct: 410 AERDAEETRLRMERARRQ-AQ-ANESDDSDDDDIAAPIVPR 448


>Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical
           protein F54C8.2 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = -1

Query: 670 LAITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLLPPNL 509
           L I S A++A++ AS A+  + F  S    + S+RAT+ +   ++  RL  PNL
Sbjct: 208 LRIRSDAINALQEASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRLCLPNL 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,970,011
Number of Sequences: 27780
Number of extensions: 414334
Number of successful extensions: 1199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)