Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120502.Seq
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    32   0.43 
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    29   2.3  
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain...    29   4.0  
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain...    29   4.0  
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa...    29   4.0  
At2g02790.1 68415.m00222 calmodulin-binding family protein very ...    28   5.3  
At1g13740.1 68414.m01613 expressed protein                             28   5.3  
At5g43490.1 68418.m05317 hypothetical protein similar to unknown...    28   7.1  
At5g35695.1 68418.m04268 hypothetical protein                          28   7.1  
At4g37060.1 68417.m05248 patatin, putative similar to patatin-li...    28   7.1  
At3g01370.1 68416.m00059 expressed protein contains Pfam domain,...    28   7.1  
At1g70420.1 68414.m08102 expressed protein                             28   7.1  
At4g25320.1 68417.m03643 DNA-binding protein-related contains Pf...    27   9.3  
At2g26340.1 68415.m03160 expressed protein                             27   9.3  
At1g60240.1 68414.m06784 apical meristem formation protein-relat...    27   9.3  

>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 180 ERAIRVHVDGKYKST-FEHADQIQHHLQIAWQSRATRCICTHTQCSLP 320
           E AI   +  KYK+  F H + + HHL    + R   C C +   SLP
Sbjct: 77  EDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREILCDCNNDCYSLP 124


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 652 AMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRL--LPPNL 509
           A     +A  A      SQ  RA SASR A IISL  K++     LPP+L
Sbjct: 305 AWKRQEMARLAREHEVMSQE-RAASASRDAAIISLIQKITGHTIQLPPSL 353


>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 870

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 54  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 194
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 822

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 54  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 194
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 1092

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 337 LNHARFGNEHCVWVQIQRVALLCHAIWRWCWI 242
           ++ AR+  EH   V+ +R ++L + IW+WC I
Sbjct: 841 ISGARYAIEH---VKSKRTSVLLNQIWKWCGI 869


>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
           similarity to SP|P12036 Neurofilament triplet H protein
           {Homo sapiens}; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 636

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +1

Query: 181 NGQYVSTSTASTNRRLSMPTKSSTISR*RG--KAGR--PAVFAPTHSAHYQI 324
           NG   S +T  ++RR S+P K     +  G  ++GR  P+  APT SA  +I
Sbjct: 472 NGNVASENTKPSDRRASLPAKIENHHQDDGLTQSGRKIPSYMAPTASAKARI 523


>At1g13740.1 68414.m01613 expressed protein
          Length = 348

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 644 RHAVGQLRRFAARVFAILPSRFSVASSHNHFVGKQNERSVASAKSGW-PPSIFASDRQ 474
           R  +  LRR  A+        F V +S +  V  +NER V ++KSG+    + +S+RQ
Sbjct: 124 RKEMQSLRRMEAKRRRCEKQSFRVGNSDDQTVSFENERWVTASKSGFLQRHLVSSNRQ 181


>At5g43490.1 68418.m05317 hypothetical protein similar to unknown
           protein (gb|AAF20218.1)
          Length = 131

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 233 CRPNP--APSPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWLL 391
           C P+P  A     V + G+P    PH  L   + ++ +  +  LP   + QEWLL
Sbjct: 33  CPPSPLAATMKVKVKENGEPSAKPPHPDLKYLNQILHVPTRELLPEIDDDQEWLL 87


>At5g35695.1 68418.m04268 hypothetical protein
          Length = 211

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 662 HVLRNVRHAVGQLRRFAARVFAILPSRFSVASSHNHFVGKQ 540
           H L N+RH    LR    R+F I  SRF++  S   F  K+
Sbjct: 87  HELFNLRHV--SLRNVIERIFGIFKSRFAIFKSAPPFSYKK 125


>At4g37060.1 68417.m05248 patatin, putative similar to patatin-like
           latex allergen [Hevea brasiliensis][PMID:10589016];
           contains patatin domain PF01734
          Length = 414

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 269 AKQGDPLYLH-PHTVLITKSGVIQLIMKSKLPYAIELQEWLLEEVIPQV-LCTGKYAPAV 442
           A Q +  YL      L   +  + L  KS L   I+L E +L   + Q+ + TG Y PA 
Sbjct: 313 ALQSEDKYLRIDDDTLEGDASTLDLSTKSNLENLIKLGEKMLTNRVMQMNIDTGTYEPAA 372

Query: 443 EMDTND 460
           E   ND
Sbjct: 373 ENINND 378


>At3g01370.1 68416.m00059 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 1011

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 550 LANKMSDRLLPPNLVGHRQFLRQIVNFGNN-IICIHFNGRRVLARA 416
           LA    DR+ PP LV +    R+ V+  N+ I C   +GR+ L ++
Sbjct: 13  LAKTFPDRIFPPFLVPNTLVSRRNVSRANSGIFCSSASGRKTLPQS 58


>At1g70420.1 68414.m08102 expressed protein
          Length = 272

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 181 NGQYVSTSTASTNRRLSMPTKSSTISR*RGKAGRPAVFAPTHSAHYQIW 327
           NG   ++ST+ST  RLS   KSS   + + K  +      T SAH +++
Sbjct: 187 NGSSSTSSTSSTAARLSGVVKSSEKGKEKTKTDKKKDKMRTKSAHEKLY 235


>At4g25320.1 68417.m03643 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 404

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 199 TSTASTNRRLSMPTKSSTISR*RGKAGRPAVFAP 300
           T  A+T   L+MPT++++  + + K GRP  + P
Sbjct: 64  TENAATPFSLTMPTENTSAEQLKKKRGRPRKYNP 97


>At2g26340.1 68415.m03160 expressed protein
          Length = 230

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 323 SGVIQLIMKSKLPYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDL 484
           S    ++MKS+L  A+   + LL+ V  QVL  GK    V    ++  A  DDL
Sbjct: 165 SNATVVLMKSQLGTALTALDSLLQTVPSQVLDKGKAMVEVYRSASEEDAGSDDL 218


>At1g60240.1 68414.m06784 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 175

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = -3

Query: 263 YLEMVLDLVGMLKRRFVLAVDVDTYCPFTIYIF*TAGDVLGHKSDWLLITEHVS 102
           YL+M++D V +  R F+ + DV    P+T+++  T   ++ H   +  +   V+
Sbjct: 18  YLKMMIDNVNVWPRHFLRSEDVYCKNPWTLFV--TRDPIILHFGRYFFVNRSVN 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,025,720
Number of Sequences: 28952
Number of extensions: 381734
Number of successful extensions: 1144
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)