Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120501.Seq
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    31   0.18 
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    29   0.95 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.3  
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    26   5.0  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   5.0  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    26   5.0  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   6.7  
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi...    25   8.8  

>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 363 HTRNGVLNDDA---ISVNGKALECGVGVVRFNGSAVNGSVWIYCQKPPVNKH 509
           HT NG ++D+     S  G+   C  G+V  +  A +G ++I C +  V +H
Sbjct: 28  HTPNGSVSDNEENETSSTGEVTRCVCGIVESDDEASDGGLYIQCDQCSVWQH 79


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 581 CNSSLYG*LLSSADTHHGHVYS 516
           C   LYG L+ S D H+GH Y+
Sbjct: 446 CEYVLYGVLVHSGDLHNGHYYA 467


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 498 PAVFGSKSKRNRLRRNH*IGQRRHHIQAPCR*QKSHRHSKRHY 370
           PA    + ++ R R NH  G  R H        + HRHS  +Y
Sbjct: 131 PANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNY 173


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +3

Query: 396 ISVNGKALECGVGVVRFNGSAVNGSVWIYCQKPPVNKHRPGIDVPVMCVSRAEQSAIEAR 575
           I +NG+  +CGV   RFN    +   W+  Q  P  +    + V V+  SR   S  EAR
Sbjct: 63  IQLNGRINKCGVISPRFNVKLKDIEKWVN-QLLPSRQ----VGVIVLTTSRGIMSHNEAR 117

Query: 576 VTSASKRYMTNF 611
              A  + +  F
Sbjct: 118 AKDAGGKILGFF 129


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = -1

Query: 458 GGTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEK 279
           GG +  + A    +++  DRN  V   A+  + +C+  CG  +  +  S + F+ E++ +
Sbjct: 39  GGNLPREAAFAIVRKVN-DRNPTVAYLALNLLDICVKNCGYAFRLQIASKE-FLNELVRR 96


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +3

Query: 396 ISVNGKALECGVGVVRFNGSAVNGSVWIYCQKPPVNKHRPGIDVPVMCVSRAEQSAIEAR 575
           I +NG+  +CGV   RFN    +   W+  Q  P  +    + V V+  SR   S  EAR
Sbjct: 63  IQLNGRINKCGVISPRFNVKLKDIEKWVN-QLLPSRQ----VGVIVLTTSRGIMSHNEAR 117

Query: 576 VTSASKRYMTNF 611
              A  + +  F
Sbjct: 118 AKDAGGKILGFF 129


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 655 HYDSIHRSRVTSRILLVKR 711
           + DS H +R+ SRILLV+R
Sbjct: 233 YVDSYHSNRLLSRILLVER 251


>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
           Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 509 VFINRRFLAVNPNGT-VYGGTIESDNADTTFKRL 411
           V + R  L ++PN T + GG+IE  + D   KRL
Sbjct: 189 VLVRRGVLMLDPNNTTILGGSIEEWDKDYFPKRL 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,344
Number of Sequences: 5004
Number of extensions: 63072
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)