Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120501.Seq
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    31   0.99 
12_01_0527 - 4177928-4178235,4178849-4181438                           30   2.3  
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    29   4.0  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     29   5.3  
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611...    28   9.2  
03_01_0545 - 4086692-4087591                                           28   9.2  

>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
            41140165-41140211,41140796-41141029,41141305-41141505,
            41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 80   TIVSFFILGHDVYIGKLKRFNKVMAYTLNLPSLRPFEIC 196
            T   + +L  DVY   +  F K  A    +PS+ PFE+C
Sbjct: 1598 TAAPYTVLRRDVYRPFVAAFAKATARITRMPSVAPFELC 1636


>12_01_0527 - 4177928-4178235,4178849-4181438
          Length = 965

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -1

Query: 518 SRPVFINRRFLAVNPNGTVYGGTIESDNADTTFKRLAVDRNRIVIQNAIT--CVYLCI 351
           S P+F     +A N N  +  GT   DNA T+ KR     N ++I  AIT   V LC+
Sbjct: 580 SIPIFRQHVDIATNGNPDLTNGTRNYDNAPTSGKRRT--HNTVIIVVAITGALVGLCL 635


>09_02_0077 +
           3964729-3964734,3965194-3965289,3965744-3973579,
           3973665-3973982,3974565-3974763,3974937-3975202,
           3975288-3975574,3976714-3977818,3977900-3978046,
           3978146-3978226,3978315-3978540,3978622-3978761,
           3979539-3979645,3979739-3979841
          Length = 3638

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 557 LLSSADTHHGHVYSRPVFINRRFLAV-NPNGTVYGGTIESDNADTTFKRLAVDRNRIVI 384
           LL   DTHH H+ S  V +   FL   NP+  ++    +    D T  RL ++ +++ I
Sbjct: 330 LLKDTDTHHLHLVSTAVHVIEGFLDYHNPSSALFR---DLGGLDDTIARLKIEVSQVDI 385


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 506 FINRRFLAVNPNGTVYGGTIESDN-ADTTFK--RLAVDRNR 393
           F  R  +    NGTVY GTI  DN A    K  RLA +R +
Sbjct: 406 FDERNVIGKGGNGTVYRGTIAKDNGAVVAIKRCRLATERQK 446


>05_05_0036 -
           21758409-21758531,21758891-21759206,21759964-21761121,
           21761236-21761333
          Length = 564

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -2

Query: 475 QTEPFTAEPLNRTTPTPHSSA----LPLTEIASSFKTPLRVCTC 356
           + +P    P N+T+PT HS A    +P+++I+ +     +   C
Sbjct: 38  ELDPQVGSPQNKTSPTKHSLAEPMNMPVSKISKTLTNDFQAAKC 81


>03_01_0545 - 4086692-4087591
          Length = 299

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 176 LRPFEICSFRGVPS 217
           LRPFE+C FR VP+
Sbjct: 255 LRPFEVCGFRVVPT 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,949,141
Number of Sequences: 37544
Number of extensions: 391456
Number of successful extensions: 821
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)