Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120501.Seq
(755 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10486| Best HMM Match : FGF (HMM E-Value=5.7e-20) 35 0.082
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_59452| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_31947| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_51528| Best HMM Match : 7tm_1 (HMM E-Value=1.4) 29 4.1
SB_49231| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_53535| Best HMM Match : zf-C2H2 (HMM E-Value=4.8e-32) 28 9.4
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 28 9.4
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 28 9.4
>SB_10486| Best HMM Match : FGF (HMM E-Value=5.7e-20)
Length = 344
Score = 34.7 bits (76), Expect = 0.082
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -1
Query: 494 RFLAVNPNGTVYGGTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTL 315
RFLA+N NGT+ GT+ S + TF+ + + + I++ T ++ +DR G+L +
Sbjct: 217 RFLAMNENGTI-SGTL-SQGVNETFELQSYGPSIVRIRHVKTGFFIAMDRRGRLRAKRVS 274
Query: 314 SDDCFMRE--IMEKNNYNTY 261
RE +K+ N +
Sbjct: 275 EITALTREANFFQKHEENLF 294
>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 311 DDCFMREIMEKNNYNTYYKCTIAS*RMWH*-RTTVLPENYRFQRAASWASLACTP 150
DDC+++E + + ++N ++ WH R T P N F +W L C+P
Sbjct: 125 DDCYIQEKLVQGSFNDFH---------WHRVRITREPRNVTFAVDRAWLKLPCSP 170
>SB_59452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -1
Query: 431 DTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTY 261
+TT + + +N + I + YL ID G+L S+D + E N+++T+
Sbjct: 102 ETTLEIHTLSKNTVRIYSPKVKKYLAIDSNGRLCSKGKASEDTVLHHTHELNDFHTF 158
>SB_31947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 384 NDDAISVNGKALECGVGVVRFNGSAVNGSVWIYCQKPPVNKHRPGIDVPVMCVSR-AEQS 560
++ A SVNG+ E GV V F + +WI K + K +D+ V + +
Sbjct: 27 SESAYSVNGQPFESGVNVSVFKRPGADALLWIETAKQQMIKLIDTVDLEGGPVGKPVVPA 86
Query: 561 AIEARVTSASKRY 599
A+ R T +R+
Sbjct: 87 ALMNRPTRGERRF 99
>SB_51528| Best HMM Match : 7tm_1 (HMM E-Value=1.4)
Length = 205
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 243 KLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLS 127
KLTY+A +G +S R LGK V +KRLS
Sbjct: 147 KLTYIAGGQEGADGMTGLSSNRMLGKGFVLEKNTVKRLS 185
>SB_49231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 243 KLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLS 127
KLTY+A +G +S R LGK V +KRLS
Sbjct: 138 KLTYIAGGQEGADGMTGLSSNRMLGKGFVLEKNTVKRLS 176
>SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 375 HYVCVPVHRPV--WPTVRIKNFIR*LLYEGNYGK 280
HY+C+P +P+ W + + + ++Y G+YG+
Sbjct: 770 HYLCIPAEKPIEEWRPSELGHKLEEVVYCGDYGQ 803
>SB_53535| Best HMM Match : zf-C2H2 (HMM E-Value=4.8e-32)
Length = 323
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 362 YLCIDRCGQLYG----SKTLSDDCFMREIMEKNNYNTYYKCTIAS 240
Y+C D+ G+ + SK C++R M + + YKCT S
Sbjct: 233 YVCPDKTGRTWKCSFCSKAFQYPCYLRRHMRSHTGESPYKCTQCS 277
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 456 RNH*IGQRRHHIQAPCR*QKSHRHSKRHYVC 364
R+H RHH PC HR + HY C
Sbjct: 34 RHHHYCWYRHHYHYPCYRHYYHRCYRHHYCC 64
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 434 ADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREI 288
A + K+ DRN V + A+T + C+ CG + + + D FM E+
Sbjct: 113 AVSAIKKKMFDRNPHVAKYALTVLEACMKNCGSIIHDEIATKD-FMDEM 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,959,091
Number of Sequences: 59808
Number of extensions: 484313
Number of successful extensions: 1377
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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