Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120501.Seq
(755 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi... 29 2.5
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 26 2.8
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 27 2.8
At5g58140.4 68418.m07274 protein kinase family protein / non pho... 29 3.3
At5g58140.3 68418.m07277 protein kinase family protein / non pho... 29 3.3
At5g58140.2 68418.m07276 protein kinase family protein / non pho... 29 3.3
At5g58140.1 68418.m07275 protein kinase family protein / non pho... 29 3.3
>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 658
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = -1
Query: 407 VDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKN 276
+ RN +V+ N++ +Y +CG+L + L D+ MR+++ +N
Sbjct: 85 IHRNALVVWNSLLSLYA---KCGKLVDAIKLFDEMPMRDVISQN 125
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
CREB-binding protein GB:S39162 from [Homo sapiens]
Length = 1670
Score = 25.8 bits (54), Expect(2) = 2.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -3
Query: 558 TAQLC*HTSRARLFPAGVY*PAVFGSKSKRNRLRRNH*IGQRRHHIQAPC 409
+ QLC R P +Y G++ KRN + G+ RH++ PC
Sbjct: 929 SCQLC-AVERLAFEPTPIYCTPC-GARVKRNAMHYTVVAGESRHYVCIPC 976
Score = 21.8 bits (44), Expect(2) = 2.8
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -3
Query: 378 RHYVCVPVH 352
RHYVC+P +
Sbjct: 969 RHYVCIPCY 977
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 27.1 bits (57), Expect(2) = 2.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 486 GSKSKRNRLRRNH*IGQRRHHIQAPC 409
G + K+N L + +G+ RH++ APC
Sbjct: 745 GIRIKKNALHYSIAVGESRHYVCAPC 770
Score = 20.6 bits (41), Expect(2) = 2.8
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -3
Query: 378 RHYVCVPVH 352
RHYVC P +
Sbjct: 763 RHYVCAPCY 771
>At5g58140.4 68418.m07274 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 689
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 454 EPLNRTTPTPHSSALPLTEIASSFKTPLRVCT 359
+P + TTPTP E + SF+TP RV T
Sbjct: 297 KPDSSTTPTPGRQTRQSDEASKSFRTPGRVST 328
>At5g58140.3 68418.m07277 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 454 EPLNRTTPTPHSSALPLTEIASSFKTPLRVCT 359
+P + TTPTP E + SF+TP RV T
Sbjct: 297 KPDSSTTPTPGRQTRQSDEASKSFRTPGRVST 328
>At5g58140.2 68418.m07276 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 454 EPLNRTTPTPHSSALPLTEIASSFKTPLRVCT 359
+P + TTPTP E + SF+TP RV T
Sbjct: 297 KPDSSTTPTPGRQTRQSDEASKSFRTPGRVST 328
>At5g58140.1 68418.m07275 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 454 EPLNRTTPTPHSSALPLTEIASSFKTPLRVCT 359
+P + TTPTP E + SF+TP RV T
Sbjct: 297 KPDSSTTPTPGRQTRQSDEASKSFRTPGRVST 328
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,485
Number of Sequences: 28952
Number of extensions: 326115
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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