Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120500.Seq
         (769 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   2.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.6  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   8.2  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 670 NPTVDWNNATDRLQSKRSKR 611
           NP V  ++ T+  +SKRSKR
Sbjct: 63  NPAVQGSSLTEGKRSKRSKR 82


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 649 CSNRR*D*AGYSPPQCWQRRCYVCAFGFP 735
           C ++  D A Y PP+   + C +   GFP
Sbjct: 432 CQDKLGDYACYCPPKHTGKNCEIYDRGFP 460


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 196 YCSNTGVLFYYLFCGPHIFFASH 128
           YC+   +L  Y FC   I F +H
Sbjct: 289 YCALIILLCIYYFCRAFIIFPTH 311


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 499 VFQFCDLWLFQIYL 458
           +     LW+FQ+YL
Sbjct: 199 IISLVQLWIFQLYL 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,296
Number of Sequences: 336
Number of extensions: 4344
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)