Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120500.Seq
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    44   2e-05
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    35   0.015
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.97 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    27   2.2  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    27   3.9  
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce...    27   3.9  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.2  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    26   6.8  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   9.0  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    25   9.0  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 24/70 (34%), Positives = 37/70 (52%)
 Frame = +1

Query: 250 GPLYKKIQVPGQTLPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 429
           G  +K++     T+P  S+V+EFID  EE  E     ++ VHC  G+ RTG ++  YL++
Sbjct: 247 GIRHKEMYFEDGTVPELSLVKEFIDLTEEVEEDG---VIAVHCKAGLGRTGCLIGAYLIY 303

Query: 430 TLGIAPQEAI 459
                  E I
Sbjct: 304 KHCFTANEVI 313


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +1

Query: 352 PGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRF-EK--ARGHKIERQNYVKIY* 522
           P + + VHC  G  RTG ++C YL+   G+  ++++  + EK   RGH +   + ++   
Sbjct: 121 PLLTLVVHCKAGKGRTGTVICSYLVAFGGLTAKQSLELYTEKRMVRGHGLTISSQIRYV- 179

Query: 523 FN*YYLHFLTNTLFYFQIV 579
              YY+  L     Y + V
Sbjct: 180 ---YYIEILKQFPNYLKAV 195


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 370 VHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVK 513
           VHC  GI+R+  +V  YLM       +EA++   + R       N+++
Sbjct: 129 VHCFAGISRSVTLVAAYLMKENNWNTEEALSHINERRSGISPNANFLR 176


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 992

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 751  GQKTYVESQKHKRNIDAANIVVENIRPNPTVDWNNATDRLQSKRSKRSI 605
            GQ++  +SQ    N   A   V   +P    +WN+A   + SK++K+ +
Sbjct: 944  GQQSNNKSQSELGNSSGAWSQVVRNKPKQGTEWNSAFKVVTSKKNKKRV 992


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 655 WNNATDRLQSKRSKRSISFDSLEEAQQF 572
           W+ A+D+++     R   FDS E AQ+F
Sbjct: 23  WDEASDQVKGYGGNRYKKFDSYEAAQEF 50


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 729 AKSTNVTSTL--PTLWWRISGLILPSIGTTPLIGYKVNVASE 610
           A+ T  T+ +  P++W R+ G +L     T L+G ++ ++S+
Sbjct: 104 AEETKPTTVVKKPSIWQRVKGGVLHFWDGTKLLGVEIKISSK 145


>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 200

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 VPGQTLPSESIVQEFIDTVEEFTE 345
           +P  TLP + IVQ  +D   EFT+
Sbjct: 153 MPALTLPRDKIVQGVVDPAVEFTK 176


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 678 IFSTTMLAASMLRLCFWLSTYVFWPVIAET 767
           I   TM+    LR  +WLST +F P++  T
Sbjct: 702 IMQLTMMGLMSLRKAYWLSTVIF-PLLCFT 730


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 718 KRNIDAANIVVENIRPNPTVDW 653
           KR  + AN   EN++P P  DW
Sbjct: 288 KRKAENANRAAENLQPLPLDDW 309


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 723 STNVTSTLPTLWWRISG 673
           STN TS LP+  W ++G
Sbjct: 180 STNTTSALPSSGWNVTG 196


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -2

Query: 531 LIKLINLDVILSFNFVTSGFFKSIYGFLRRN 439
           L+ L NL ++  F F+ +GF KS+  FLR++
Sbjct: 33  LLSLGNLLLVFGF-FMIAGFSKSVSFFLRKD 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,250
Number of Sequences: 5004
Number of extensions: 65781
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)