Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120500.Seq
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 54 1e-07
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 53 2e-07
05_01_0120 - 828834-831143 36 0.036
10_08_0904 + 21464762-21467479 31 1.3
04_04_0060 + 22422822-22423003,22423158-22423229,22423271-224234... 30 2.3
04_04_1573 - 34533973-34535595 29 3.1
05_05_0082 + 22252993-22255617 29 4.1
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928 28 7.1
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 28 7.1
07_03_1794 - 29580767-29584189 28 7.1
12_01_0219 - 1651833-1651987,1652172-1652471,1652889-1652967,165... 28 9.4
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169... 28 9.4
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 28 9.4
02_03_0101 + 15233783-15234601 28 9.4
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 54.0 bits (124), Expect = 1e-07
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Frame = +1
Query: 250 GPLYKKIQVPGQ-TLPSESIVQEFIDTVEEFTEKCPGM----LVGVHCTHGINRTGYMVC 414
G Y KI G+ +P V F+ V F ++ + VHCTHG NRTG+M+
Sbjct: 157 GTKYVKIACKGRDAVPDNESVNTFVYEVMAFLDRQKQSRNPKYILVHCTHGHNRTGFMIV 216
Query: 415 RYLMHTLGIAPQEAINRFEKARGHKIERQNYVK-IY*F 525
YLM T + EA+N F + R I + +Y++ IY F
Sbjct: 217 HYLMRTQLSSVTEALNIFAQRRPPGIYKNDYIQAIYSF 254
Score = 34.3 bits (75), Expect = 0.11
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +2
Query: 29 PARWHNYLQCGQVIKDSNLICFKTPLQPELFAYVTSEEDVWTTEQIV----KQNPSIGAI 196
P W + G+ I ++ K PL E F ++++Q+V K IG +
Sbjct: 82 PQGWLDCPGSGEPI--DRIVPSKVPLD-ETFNESVPAGKRYSSKQVVNKQRKAGRDIGLV 138
Query: 197 IDLTNTSKYYDGVHFLRAG-RYTK 265
IDLTNT++YY + R G +Y K
Sbjct: 139 IDLTNTTRYYSPTEWTRQGTKYVK 162
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = +1
Query: 307 VQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGH 486
V F+D ++ K P ++ VHCTHG NRTG+M+ YLM T EAIN F K R
Sbjct: 212 VMMFLDRQKQ--SKNPKYIL-VHCTHGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPP 268
Query: 487 KIERQNYVK 513
I +++Y++
Sbjct: 269 GIYKRDYIE 277
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 185 IGAIIDLTNTSKYYDGVHFLRAG 253
IG +IDLTNT++YY + R G
Sbjct: 163 IGLVIDLTNTTRYYSPAEWTRQG 185
>05_01_0120 - 828834-831143
Length = 769
Score = 35.9 bits (79), Expect = 0.036
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 283 QTLPSESIVQEFIDTVEEFTE-KCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 459
Q P+E I D + F + + G V VHC G++R+ +V YLM G + +A
Sbjct: 198 QDSPTEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAF 257
Query: 460 NRFEKARG 483
+ ARG
Sbjct: 258 QLVKAARG 265
>10_08_0904 + 21464762-21467479
Length = 905
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Frame = +1
Query: 220 IL*WCALFAGGPLYKKIQVPGQTLPSESIVQEFID-TVEEFTEKCPGMLVGVHCTHGINR 396
+L CA A L K Q+ GQ + E + E+I T+ + KC M + + +
Sbjct: 601 VLDTCANLATIELGK--QIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK 658
Query: 397 TGY-----MVCRYLMHTLGIAPQEAINRFEKARGHKI 492
+ M+C Y +H LG+ EA+ FE+ + +
Sbjct: 659 RDFVSWNAMICGYALHGLGV---EALRMFERMQKENV 692
>04_04_0060 +
22422822-22423003,22423158-22423229,22423271-22423401,
22423504-22423697,22424832-22424906
Length = 217
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 235 ALFAGGPLYKKIQVPGQTLPSESIVQ-EFIDTVEEFTEKCPGML 363
A+ P+Y+KI+ T+ + V E +DTV E TEK G L
Sbjct: 113 AIIVAIPIYRKIRALEDTVEKTAEVAIEVVDTVAEATEKVAGEL 156
>04_04_1573 - 34533973-34535595
Length = 540
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/60 (20%), Positives = 30/60 (50%)
Frame = +2
Query: 116 LFAYVTSEEDVWTTEQIVKQNPSIGAIIDLTNTSKYYDGVHFLRAGRYTKKFKYLARLCR 295
L YV + D+W ++++++ +G ++D+ + D HF + ++ + K L +
Sbjct: 307 LLDYVAQDLDMWAGKEVLERCQELGFVVDVVTYNTVMD--HFCKKRKWLRVLKLFTDLLK 364
>05_05_0082 + 22252993-22255617
Length = 874
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = -1
Query: 769 YVSAITGQKTYVESQKHKRNIDAANIVVENIRPNPTVDWNNATDRLQSKRSKRSISFDSL 590
Y AI V K NID+A IV E V WN+ + S ++ S ++
Sbjct: 533 YHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNS----MISGYAQHGYSMKAI 588
Query: 589 EEAQQFE 569
E +Q E
Sbjct: 589 ETFRQME 595
>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
Length = 839
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 77 SNLICFKTPLQPELFAYVTSEEDVWTTEQIVKQNPSIGAIIDLTNTSKYYDGVHFLR 247
SN++C L E +++VT W Q++K+N I + ++ + +K GV+ L+
Sbjct: 197 SNMLC---QLDKEKYSHVTKAS--WGEAQLIKRNTGIPSKQEILDVAKEVGGVYQLK 248
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 6/25 (24%)
Frame = -1
Query: 454 LPAAQYPGCALN------ICTPCNR 398
+PA Q+PGC +N +CT CN+
Sbjct: 236 IPACQHPGCKINGRTRIMVCTGCNK 260
>07_03_1794 - 29580767-29584189
Length = 1140
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 253 PLYKKIQVPGQTLPSESIVQEFIDTVEEFTEK 348
P+Y+KI+ + L SES+VQE + V+E +K
Sbjct: 264 PIYEKIEKFFE-LNSESVVQEMAERVDELVDK 294
>12_01_0219 -
1651833-1651987,1652172-1652471,1652889-1652967,
1653047-1653111,1653236-1653288,1653666-1654084
Length = 356
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +1
Query: 265 KIQVPGQTLPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIA 444
++ VP + E+++ ++ E V VHC G++R+ ++ YLM T +
Sbjct: 96 RMAVPLRDTEEENLLDHLEPCLDFIDEGRKEGNVLVHCFAGVSRSATIIVAYLMRTEQKS 155
Query: 445 PQEAINRFEK 474
+EA+ ++
Sbjct: 156 LEEALESLKE 165
>11_01_0217 -
1698721-1698875,1699122-1699421,1699840-1699918,
1699998-1700062,1700187-1700239,1700654-1701072
Length = 356
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +1
Query: 265 KIQVPGQTLPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIA 444
++ VP + E+++ ++ E V VHC G++R+ ++ YLM T +
Sbjct: 96 RMAVPLRDTEEENLLDHLEPCLDFIDEGRKEGNVLVHCFAGVSRSATIIVAYLMRTEQKS 155
Query: 445 PQEAINRFEK 474
+EA+ ++
Sbjct: 156 LEEALESLKE 165
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 2/23 (8%)
Frame = -2
Query: 534 ILIKLINLDVIL--SFNFVTSGF 472
+L+KL++LDV+L + NF+ SGF
Sbjct: 568 LLVKLLDLDVLLPRAVNFIVSGF 590
>02_03_0101 + 15233783-15234601
Length = 272
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 59 GQVIKDSNLICFKTPLQPELFAYVTSEEDV-WTTEQIVKQNPSIGAIIDL 205
GQV+ D ++ K LF V DV W TEQ+V + +G ++D+
Sbjct: 14 GQVLDDMEVVEMKY-----LFGKVLMPSDVSWDTEQLVIPDEHVGKLLDM 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,590,945
Number of Sequences: 37544
Number of extensions: 421865
Number of successful extensions: 1127
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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