Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120500.Seq
(769 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7) 42 7e-04
SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09) 38 0.009
SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.021
SB_36904| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2) 33 0.34
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0) 31 0.77
SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07) 30 2.4
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 3.1
SB_10701| Best HMM Match : DSPc (HMM E-Value=0) 29 3.1
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027) 29 4.1
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7) 29 5.5
SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85) 28 7.2
SB_16910| Best HMM Match : EGF (HMM E-Value=0) 28 9.5
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +1
Query: 292 PSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIA-PQEAINRF 468
P +++ F D V+E+ + + +HC G RTG M+C YL+H +EA+ +
Sbjct: 38 PPFELIKPFCDDVDEWLKASNLNVAIIHCKAGKGRTGVMICAYLLHNGHFKDTKEAMEYY 97
Query: 469 EKARGHKIERQNYVKIY*FN*YYLHFLTNTLFYFQIVALL 588
AR + + YY + L N L Y + LL
Sbjct: 98 GNARTRNAKGVTIPSQRRYVEYYGYLLRNCLTYVPTMVLL 137
>SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)
Length = 479
Score = 41.5 bits (93), Expect = 7e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1
Query: 415 RYLMHTLGIAPQEAINRFEKARGHKIERQNYVK 513
RYL+ G P++AI F +ARGH +ER+NY++
Sbjct: 281 RYLIDCCGYEPEKAIEAFNQARGHPLERENYLE 313
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 158 EQIVKQNPSIGAIIDLTNTSKYYDGVHFLRAGRYTKKFKYLARLCRLKASFKNLL 322
EQ+ ++ +G ++D T T++YYD F G KK + K K L
Sbjct: 229 EQLAQREMKLGLVLDFTFTTRYYDPREFTAEGIIYKKMMCAGHVIPKKKDIKRYL 283
>SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)
Length = 195
Score = 37.9 bits (84), Expect = 0.009
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 292 PSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFE 471
PS + E + +EE K G V VHC G R+ +V YLM + + P+EA +
Sbjct: 109 PSLDNLSEGVKFIEEIRSK--GDSVYVHCKAGRGRSATLVACYLMKNMALNPEEAHLFIK 166
Query: 472 KARGH-KIERQNYVKIY*FN*YYLH 543
R H ++ Q + + F+ YLH
Sbjct: 167 SKRPHIRLASQQWSAVQQFH-DYLH 190
>SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 36.7 bits (81), Expect = 0.021
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 LYKKIQVPGQTLPSESIVQEFIDTVEEFTE-KCPGMLVGVHCTHGINRTGYMVCRYLMHT 432
+YK+IQ+ E I Q F + + E + G V VHC G++R+ + Y+M
Sbjct: 65 IYKRIQINDSY--QEDIGQHFDEAIAFIDEARSRGSSVLVHCHAGVSRSATVTVAYVMQH 122
Query: 433 LGIAPQEAINRFEKAR 480
LG++ EA ++ R
Sbjct: 123 LGLSLNEAYQFVKEKR 138
>SB_36904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 289 LPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 459
+P+++IV+ F ++ C G V +HC G+ RTG ++ YL+ + EA+
Sbjct: 219 IPTKAIVKRFTRILDH----CEGA-VAIHCRAGLGRTGTLIACYLIKQYKFSAAEAV 270
>SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)
Length = 462
Score = 32.7 bits (71), Expect = 0.34
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 2 KIESTCKMFPARWHNYLQCGQVIKDSNLICFKTPLQ-PELFAYVTSEEDVWTTEQIVKQN 178
+IE + F + L Q DS+++C P++ P +A + ++EDV TTE + ++
Sbjct: 401 EIEMYYERFQPEEKHILAFHQGFHDSSVVCLFDPVKSPRCYAIIANKEDVQTTEAHITES 460
Query: 179 PS 184
S
Sbjct: 461 VS 462
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 313 EFIDTVEEFTEKCPGMLVGVHCTHGINRTG 402
+ I V+ + +KC L VHC+ G+ RTG
Sbjct: 3599 DLIGQVQRWQQKCGVQLTAVHCSAGVGRTG 3628
>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 839
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 249 RAVIQKNSSTWPDFAV*KHRSRIY*HGRRIYRKVSRHVGGRALH 380
R ++Q + + WPD V H + + RRI VSR G +H
Sbjct: 321 REIVQYHYTAWPDHGVPTHATSLLAFIRRIRNSVSRDAGPIVVH 364
>SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07)
Length = 324
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = +1
Query: 256 LYKKIQVPGQTLPSESIVQEF-IDTVEEFTEKCPGML-----VGVHCTHGINRTGYMVCR 417
LYK+ + LP E + E I+ + + G+L V VHC G+ R+ +VC
Sbjct: 211 LYKEEGISYIWLPMEDLSTESRIENLPQGVYLLHGLLNNGHRVYVHCNGGVGRSTAIVCG 270
Query: 418 YLMHTL 435
+LM+ L
Sbjct: 271 FLMYVL 276
>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1252
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 277 PGQTLPSESI-VQEFIDTVEEFTEKCPGMLVGVHCTHGINRTG 402
P LP + + + I VE++ ++ + VHC+ G+ RTG
Sbjct: 1118 PDSGLPESGVGLIDLIGQVEKWQQQSGNTCITVHCSGGVGRTG 1160
>SB_10701| Best HMM Match : DSPc (HMM E-Value=0)
Length = 365
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +1
Query: 316 FIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKAR 480
FID+V K G V VHC GI+R+ + YL+ L EA +K R
Sbjct: 248 FIDSV-----KASGGRVLVHCQAGISRSATICLAYLISRLNFRLDEAYEYVKKRR 297
>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
Length = 617
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 733 ESQKHKRNIDAANIVVENIRPNPTVDWNNATDRLQSKRSKRS 608
ES K N N +++NI NPT++ N+ R Q KR+
Sbjct: 572 ESSSTKEN----NALIDNIPVNPTINGNHGNKRSQEMNEKRA 609
>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
Length = 1815
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 134 SEEDVWTTEQIVKQNPSIG-AIIDLTNTSKYYD 229
S D W TE++++ + SI +IDL N + Y+D
Sbjct: 155 STNDKWETEEVIQNDHSIKYKLIDLQNFAIYWD 187
>SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)
Length = 203
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = -2
Query: 174 CFTICSVVHTSSSLVTYANNSGC------KGVLKHIRLE--SFITWPHCK*LCQRAGNIL 19
C T V+H + +L+ Y ++S C + V+ H+ L ++T HC C+ +L
Sbjct: 100 CHTRIVVLHDTLALLCYMSHSHCCATCHTRTVVLHVTLALLCYMTHSHCCVTCRTRTVVL 159
Query: 18 HV 13
HV
Sbjct: 160 HV 161
>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
Length = 1552
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 319 IDTVEEFTEKCPGMLVGVHCTHGINRTG 402
ID V+++ +C GV+C H IN G
Sbjct: 720 IDRVDDYECRCAPGYTGVNCDHNINDCG 747
>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1299
Score = 27.9 bits (59), Expect = 9.5
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +3
Query: 252 AVIQKNSSTWPDFA--V*KHRSRIY*HGRRIYRKVSRHVGGRALHTRH*SHRLHGVQI-F 422
AV + T+ +FA K ++++ H R +Y H HT H + R HG
Sbjct: 958 AVDKTMEETFMEFAKSAGKLQNKLQRHTRTVYIATRTHCLHSDTHTVHIARRTHGTNSDT 1017
Query: 423 NAHPGYCAAGSHK*I*KSQRSQN*KTKLRQ 512
+A Y AGSH+ + +R + K K R+
Sbjct: 1018 HALRTYRHAGSHE---RRKRKRRRKRKRRR 1044
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,153,984
Number of Sequences: 59808
Number of extensions: 504591
Number of successful extensions: 1336
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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