Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120499.Seq
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    26   5.6  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   5.6  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   7.4  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.7  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   9.7  

>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 108 EFDPDMKITFSYKSIVASENLE*NDYSLIIIRQLDTGALEL--CIELPLRYPMSCRPTTC 281
           E + + K   S K+ +     +  +YS I I   +   LE+  CIE    Y  +C+ T  
Sbjct: 102 ELENEKKANHSLKNELLKTREQIKNYSKINILIKELFGLEVADCIEDEDGYRFNCKNTGR 161

Query: 282 MSSFEYKIIL 311
             + EY+++L
Sbjct: 162 RGTLEYQLLL 171


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 350 EVSHQPIKAKK*VYTGQVV*QLYIKVYNDSCHLHSRSHISV 472
           EV H  +  K  V T +   QLY    ND C   SRS   V
Sbjct: 616 EVIHPSVPVKLVVSTTEPAFQLYTGDGNDICEFQSRSGFCV 656


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 633 FSAENANLRSL*LERRNCSKMFFLL 707
           F +ENAN   + +E   CSKM +++
Sbjct: 300 FPSENANKTQINIENATCSKMTWIM 324


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 10  SPYSFKNILLRLAIRNGMVRDCDMYHIETSRLSNLTRI*KLLLVTSRLLRVKT 168
           S Y++  + L  A+ NG+ R C+  +I+        R+   +    RL+ + T
Sbjct: 374 SSYTYFGLSLSAAVANGLHRSCENPNIDPKTKELRNRLWWSVYTMDRLISIAT 426


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 291 FEYKIILRYVSYAEVATFYRRYLISQLKQK 380
           F YK+   + SY   AT  RR+L+ +  ++
Sbjct: 204 FSYKVTTVHKSYQRFATLLRRHLLDKTAKR 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,427
Number of Sequences: 5004
Number of extensions: 66598
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)