Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120499.Seq
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    30   1.7  
AF016676-9|AAG24107.1|  394|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF022972-13|AAC48241.2|  527|Caenorhabditis elegans Udp-glucuron...    28   9.2  

>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
            family protein 4 protein.
          Length = 1802

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
 Frame = +3

Query: 318  VSYAEVATFYRRYLISQLKQKSRCIQVR--------WYNNYT*K--YITIRVICIHEVIY 467
            VS+A     Y ++LI++ K+KS+ +Q+         W   +     +  IR++C   + Y
Sbjct: 1165 VSFAVCVAGYSQFLITERKKKSKHMQLLSGIRPWMFWLTAFIWDAAWFVIRILCFDAIFY 1224

Query: 468  LFMITRLT 491
            +F IT  T
Sbjct: 1225 IFNITAYT 1232


>AF016676-9|AAG24107.1|  394|Caenorhabditis elegans Hypothetical
           protein F41B5.10 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 369 LKQKSRCIQVRWYNNYT*KYITIRVICIHEVIYLFMI 479
           L  K+  + V WY +Y+ + I   + C H+ IYL ++
Sbjct: 252 LNSKNVEMDVSWYTDYSFEQIAYFMDCFHDDIYLQIV 288


>AF022972-13|AAC48241.2|  527|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein41 protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 557 ISMLLNNFRKFKCTPALSKGLFCQSSYHEQIYDFVNAN 444
           +  +L  F  +K     SK L  +S YH   Y F+N+N
Sbjct: 217 LGQILIAFPNWKTLQDPSKDLLVESEYHRAPYVFINSN 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,629,842
Number of Sequences: 27780
Number of extensions: 366373
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)